Lineage for Species: Trichodysplasia spinulosa-associated polyomavirus [TaxId: 862909]

  1. Root: SCOPe 2.08
  2. Class b: All beta proteins [48724] (180 folds)
  3. Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. Superfamily b.121.6: Group I dsDNA viruses [88648] (2 families) (S)
  5. Family b.121.6.1: Papovaviridae-like VP [88649] (3 proteins)
  6. Protein automated matches [191200] (13 species)
    not a true protein
  7. Species Trichodysplasia spinulosa-associated polyomavirus [TaxId:862909] [275642] (6 PDB entries)

PDB entries in Species: Trichodysplasia spinulosa-associated polyomavirus [TaxId: 862909]:

  1. Domain(s) for 4u5z:
    1. Domain d4u5za_: 4u5z A: [275644]
      automated match to d4mbzj_
    2. Domain d4u5zb_: 4u5z B: [275647]
      automated match to d4mbzj_
    3. Domain d4u5zc_: 4u5z C: [275648]
      automated match to d4mbzj_
    4. Domain d4u5zd_: 4u5z D: [275646]
      automated match to d4mbzj_
    5. Domain d4u5ze_: 4u5z E: [275645]
      automated match to d4mbzj_
    6. Domain d4u5zf_: 4u5z F: [275643]
      automated match to d4mbzj_
    7. Domain d4u5zg_: 4u5z G: [275653]
      automated match to d4mbzj_
    8. Domain d4u5zh_: 4u5z H: [275654]
      automated match to d4mbzj_
    9. Domain d4u5zi_: 4u5z I: [275652]
      automated match to d4mbzj_
    10. Domain d4u5zj_: 4u5z J: [275656]
      automated match to d4mbzj_
  2. Domain(s) for 4u60:
    1. Domain d4u60a_: 4u60 A: [275650]
      Other proteins in same PDB: d4u60c2
      automated match to d4mbzj_
      complexed with edo, gol, sia
    2. Domain d4u60b_: 4u60 B: [275649]
      Other proteins in same PDB: d4u60c2
      automated match to d4mbzj_
      complexed with edo, gol, sia
    3. Domain d4u60c1: 4u60 C:33-303 [275651]
      Other proteins in same PDB: d4u60c2
      automated match to d4mbzj_
      complexed with edo, gol, sia
    4. Domain d4u60d_: 4u60 D: [275655]
      Other proteins in same PDB: d4u60c2
      automated match to d4mbzj_
      complexed with edo, gol, sia
    5. Domain d4u60e_: 4u60 E: [275661]
      Other proteins in same PDB: d4u60c2
      automated match to d4mbzj_
      complexed with edo, gol, sia
  3. Domain(s) for 4u61:
    1. Domain d4u61a_: 4u61 A: [275669]
      automated match to d4mbzj_
      complexed with gol, sia
    2. Domain d4u61b_: 4u61 B: [275668]
      automated match to d4mbzj_
      complexed with gol, sia
    3. Domain d4u61c_: 4u61 C: [275670]
      automated match to d4mbzj_
      complexed with gol, sia
    4. Domain d4u61d_: 4u61 D: [275674]
      automated match to d4mbzj_
      complexed with gol, sia
    5. Domain d4u61e_: 4u61 E: [275671]
      automated match to d4mbzj_
      complexed with gol, sia
    6. Domain d4u61f_: 4u61 F: [275673]
      automated match to d4mbzj_
      complexed with gol, sia
    7. Domain d4u61g_: 4u61 G: [275672]
      automated match to d4mbzj_
      complexed with gol, sia
    8. Domain d4u61h_: 4u61 H: [275675]
      automated match to d4mbzj_
      complexed with gol, sia
    9. Domain d4u61i_: 4u61 I: [275677]
      automated match to d4mbzj_
      complexed with gol, sia
    10. Domain d4u61j_: 4u61 J: [275676]
      automated match to d4mbzj_
      complexed with gol, sia
  4. Domain(s) for 4u62:
    1. Domain d4u62a_: 4u62 A: [275657]
      Other proteins in same PDB: d4u62d2, d4u62f2
      automated match to d4mbzj_
      complexed with edo, gol, sia
    2. Domain d4u62b_: 4u62 B: [275659]
      Other proteins in same PDB: d4u62d2, d4u62f2
      automated match to d4mbzj_
      complexed with edo, gol, sia
    3. Domain d4u62c_: 4u62 C: [275658]
      Other proteins in same PDB: d4u62d2, d4u62f2
      automated match to d4mbzj_
      complexed with edo, gol, sia
    4. Domain d4u62d1: 4u62 D:33-303 [275660]
      Other proteins in same PDB: d4u62d2, d4u62f2
      automated match to d4mbzj_
      complexed with edo, gol, sia
    5. Domain d4u62e_: 4u62 E: [275662]
      Other proteins in same PDB: d4u62d2, d4u62f2
      automated match to d4mbzj_
      complexed with edo, gol, sia
    6. Domain d4u62f1: 4u62 F:33-303 [275663]
      Other proteins in same PDB: d4u62d2, d4u62f2
      automated match to d4mbzj_
      complexed with edo, gol, sia
    7. Domain d4u62g_: 4u62 G: [275664]
      Other proteins in same PDB: d4u62d2, d4u62f2
      automated match to d4mbzj_
      complexed with edo, gol, sia
    8. Domain d4u62h_: 4u62 H: [275666]
      Other proteins in same PDB: d4u62d2, d4u62f2
      automated match to d4mbzj_
      complexed with edo, gol, sia
    9. Domain d4u62i_: 4u62 I: [275667]
      Other proteins in same PDB: d4u62d2, d4u62f2
      automated match to d4mbzj_
      complexed with edo, gol, sia
    10. Domain d4u62j_: 4u62 J: [275665]
      Other proteins in same PDB: d4u62d2, d4u62f2
      automated match to d4mbzj_
      complexed with edo, gol, sia
  5. Domain(s) for 6hku:
    1. Domain d6hkua_: 6hku A: [366808]
      automated match to d4u62a_
      complexed with gal, glc, gol, sia
    2. Domain d6hkub_: 6hku B: [366817]
      automated match to d4u62a_
      complexed with gal, glc, gol, sia
    3. Domain d6hkuc_: 6hku C: [366838]
      automated match to d4u62a_
      complexed with gal, glc, gol, sia
    4. Domain d6hkud_: 6hku D: [366824]
      automated match to d4u62a_
      complexed with gal, glc, gol, sia
    5. Domain d6hkue_: 6hku E: [366888]
      automated match to d4u62a_
      complexed with gal, glc, gol, sia
    6. Domain d6hkuf_: 6hku F: [366823]
      automated match to d4u62a_
      complexed with gal, glc, gol, sia
    7. Domain d6hkug_: 6hku G: [366813]
      automated match to d4u62a_
      complexed with gal, glc, gol, sia
    8. Domain d6hkuh_: 6hku H: [366843]
      automated match to d4u62a_
      complexed with gal, glc, gol, sia
    9. Domain d6hkui_: 6hku I: [366874]
      automated match to d4u62a_
      complexed with gal, glc, gol, sia
    10. Domain d6hkuj_: 6hku J: [366884]
      automated match to d4u62a_
      complexed with gal, glc, gol, sia
  6. Domain(s) for 6hkv:
    1. Domain d6hkva_: 6hkv A: [366863]
      automated match to d4u62a_
      complexed with cl, gol, gxb, mg
    2. Domain d6hkvb_: 6hkv B: [366818]
      automated match to d4u62a_
      complexed with cl, gol, gxb, mg
    3. Domain d6hkvc_: 6hkv C: [366908]
      automated match to d4u62a_
      complexed with cl, gol, gxb, mg
    4. Domain d6hkvd_: 6hkv D: [366832]
      automated match to d4u62a_
      complexed with cl, gol, gxb, mg
    5. Domain d6hkve_: 6hkv E: [366833]
      automated match to d4u62a_
      complexed with cl, gol, gxb, mg
    6. Domain d6hkvf_: 6hkv F: [366816]
      automated match to d4u62a_
      complexed with cl, gol, gxb, mg
    7. Domain d6hkvg_: 6hkv G: [366825]
      automated match to d4u62a_
      complexed with cl, gol, gxb, mg
    8. Domain d6hkvh_: 6hkv H: [366834]
      automated match to d4u62a_
      complexed with cl, gol, gxb, mg
    9. Domain d6hkvi_: 6hkv I: [366819]
      automated match to d4u62a_
      complexed with cl, gol, gxb, mg
    10. Domain d6hkvj_: 6hkv J: [366831]
      automated match to d4u62a_
      complexed with cl, gol, gxb, mg

More info for Species Trichodysplasia spinulosa-associated polyomavirus [TaxId:862909] from b.121.6.1 automated matches

Timeline for Species Trichodysplasia spinulosa-associated polyomavirus [TaxId:862909] from b.121.6.1 automated matches: