Lineage for Species: Trichodysplasia spinulosa-associated polyomavirus [TaxId: 862909]

  1. Root: SCOPe 2.07
  2. 2344607Class b: All beta proteins [48724] (178 folds)
  3. 2409884Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. 2411049Superfamily b.121.6: Group I dsDNA viruses [88648] (2 families) (S)
  5. 2411050Family b.121.6.1: Papovaviridae-like VP [88649] (3 protein domains)
  6. 2411120Protein automated matches [191200] (7 species)
    not a true protein
  7. 2411352Species Trichodysplasia spinulosa-associated polyomavirus [TaxId:862909] [275642] (4 PDB entries)

PDB entries in Species: Trichodysplasia spinulosa-associated polyomavirus [TaxId: 862909]:

  1. Domain(s) for 4u5z:
    1. 2411378Domain d4u5za_: 4u5z A: [275644]
      automated match to d4mbzj_
    2. 2411379Domain d4u5zb_: 4u5z B: [275647]
      automated match to d4mbzj_
    3. 2411380Domain d4u5zc_: 4u5z C: [275648]
      automated match to d4mbzj_
    4. 2411381Domain d4u5zd_: 4u5z D: [275646]
      automated match to d4mbzj_
    5. 2411382Domain d4u5ze_: 4u5z E: [275645]
      automated match to d4mbzj_
    6. 2411383Domain d4u5zf_: 4u5z F: [275643]
      automated match to d4mbzj_
    7. 2411384Domain d4u5zg_: 4u5z G: [275653]
      automated match to d4mbzj_
    8. 2411385Domain d4u5zh_: 4u5z H: [275654]
      automated match to d4mbzj_
    9. 2411386Domain d4u5zi_: 4u5z I: [275652]
      automated match to d4mbzj_
    10. 2411387Domain d4u5zj_: 4u5z J: [275656]
      automated match to d4mbzj_
  2. Domain(s) for 4u60:
    1. 2411353Domain d4u60a_: 4u60 A: [275650]
      Other proteins in same PDB: d4u60c2
      automated match to d4mbzj_
      complexed with bgc, edo, gal, gol, nga, sia
    2. 2411354Domain d4u60b_: 4u60 B: [275649]
      Other proteins in same PDB: d4u60c2
      automated match to d4mbzj_
      complexed with bgc, edo, gal, gol, nga, sia
    3. 2411355Domain d4u60c1: 4u60 C:33-303 [275651]
      Other proteins in same PDB: d4u60c2
      automated match to d4mbzj_
      complexed with bgc, edo, gal, gol, nga, sia
    4. 2411356Domain d4u60d_: 4u60 D: [275655]
      Other proteins in same PDB: d4u60c2
      automated match to d4mbzj_
      complexed with bgc, edo, gal, gol, nga, sia
    5. 2411357Domain d4u60e_: 4u60 E: [275661]
      Other proteins in same PDB: d4u60c2
      automated match to d4mbzj_
      complexed with bgc, edo, gal, gol, nga, sia
  3. Domain(s) for 4u61:
    1. 2411368Domain d4u61a_: 4u61 A: [275669]
      automated match to d4mbzj_
      complexed with gal, gol, sia
    2. 2411369Domain d4u61b_: 4u61 B: [275668]
      automated match to d4mbzj_
      complexed with gal, gol, sia
    3. 2411370Domain d4u61c_: 4u61 C: [275670]
      automated match to d4mbzj_
      complexed with gal, gol, sia
    4. 2411371Domain d4u61d_: 4u61 D: [275674]
      automated match to d4mbzj_
      complexed with gal, gol, sia
    5. 2411372Domain d4u61e_: 4u61 E: [275671]
      automated match to d4mbzj_
      complexed with gal, gol, sia
    6. 2411373Domain d4u61f_: 4u61 F: [275673]
      automated match to d4mbzj_
      complexed with gal, gol, sia
    7. 2411374Domain d4u61g_: 4u61 G: [275672]
      automated match to d4mbzj_
      complexed with gal, gol, sia
    8. 2411375Domain d4u61h_: 4u61 H: [275675]
      automated match to d4mbzj_
      complexed with gal, gol, sia
    9. 2411376Domain d4u61i_: 4u61 I: [275677]
      automated match to d4mbzj_
      complexed with gal, gol, sia
    10. 2411377Domain d4u61j_: 4u61 J: [275676]
      automated match to d4mbzj_
      complexed with gal, gol, sia
  4. Domain(s) for 4u62:
    1. 2411358Domain d4u62a_: 4u62 A: [275657]
      Other proteins in same PDB: d4u62d2, d4u62f2
      automated match to d4mbzj_
      complexed with edo, gol, sia
    2. 2411359Domain d4u62b_: 4u62 B: [275659]
      Other proteins in same PDB: d4u62d2, d4u62f2
      automated match to d4mbzj_
      complexed with edo, gol, sia
    3. 2411360Domain d4u62c_: 4u62 C: [275658]
      Other proteins in same PDB: d4u62d2, d4u62f2
      automated match to d4mbzj_
      complexed with edo, gol, sia
    4. 2411361Domain d4u62d1: 4u62 D:33-303 [275660]
      Other proteins in same PDB: d4u62d2, d4u62f2
      automated match to d4mbzj_
      complexed with edo, gol, sia
    5. 2411362Domain d4u62e_: 4u62 E: [275662]
      Other proteins in same PDB: d4u62d2, d4u62f2
      automated match to d4mbzj_
      complexed with edo, gol, sia
    6. 2411363Domain d4u62f1: 4u62 F:33-303 [275663]
      Other proteins in same PDB: d4u62d2, d4u62f2
      automated match to d4mbzj_
      complexed with edo, gol, sia
    7. 2411364Domain d4u62g_: 4u62 G: [275664]
      Other proteins in same PDB: d4u62d2, d4u62f2
      automated match to d4mbzj_
      complexed with edo, gol, sia
    8. 2411365Domain d4u62h_: 4u62 H: [275666]
      Other proteins in same PDB: d4u62d2, d4u62f2
      automated match to d4mbzj_
      complexed with edo, gol, sia
    9. 2411366Domain d4u62i_: 4u62 I: [275667]
      Other proteins in same PDB: d4u62d2, d4u62f2
      automated match to d4mbzj_
      complexed with edo, gol, sia
    10. 2411367Domain d4u62j_: 4u62 J: [275665]
      Other proteins in same PDB: d4u62d2, d4u62f2
      automated match to d4mbzj_
      complexed with edo, gol, sia

More info for Species Trichodysplasia spinulosa-associated polyomavirus [TaxId:862909] from b.121.6.1 automated matches

Timeline for Species Trichodysplasia spinulosa-associated polyomavirus [TaxId:862909] from b.121.6.1 automated matches: