Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2413226Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2434269Fold c.7: PFL-like glycyl radical enzymes [51997] (1 superfamily)
    contains: barrel, closed; n=10, S=10; accommodates a hairpin loop inside the barrel
  4. 2434270Superfamily c.7.1: PFL-like glycyl radical enzymes [51998] (6 families) (S)
    duplication: the N- and C-terminal halves have similar topologies
  5. 2434363Family c.7.1.0: automated matches [275322] (1 protein)
    not a true family
  6. 2434364Protein automated matches [275324] (4 species)
    not a true protein

Species:

  1. 2434365Archaeoglobus fulgidus [TaxId:2234] [346280] (1 PDB entry)
  2. 2434368Desulfovibrio alaskensis [TaxId:207559] [323257] (6 PDB entries)
    1. Domains for 5fau:
      1. 2434375Domain d5faua_: 5fau A: [323369]
        automated match to d5a0uh_
        complexed with cht, gol
      2. 2434376Domain d5faub_: 5fau B: [323412]
        automated match to d5a0uh_
        complexed with cht, gol
      3. 2434377Domain d5fauc_: 5fau C: [323386]
        automated match to d5a0uh_
        complexed with cht, gol
      4. 2434378Domain d5faud_: 5fau D: [323307]
        automated match to d5a0uh_
        complexed with cht, gol
    2. Domains for 5fav:
      1. 2434369Domain d5fava1: 5fav A:53-846 [323342]
        Other proteins in same PDB: d5fava2, d5favb2
        automated match to d5a0uh_
        complexed with mli, na; mutant
      2. 2434370Domain d5favb1: 5fav B:53-846 [323264]
        Other proteins in same PDB: d5fava2, d5favb2
        automated match to d5a0uh_
        complexed with mli, na; mutant
    3. Domains for 5faw:
      1. 2434371Domain d5fawa1: 5faw A:53-846 [323298]
        Other proteins in same PDB: d5fawa2, d5fawb2
        automated match to d5a0uh_
        complexed with cht, mli, na; mutant
      2. 2434372Domain d5fawb1: 5faw B:53-846 [323258]
        Other proteins in same PDB: d5fawa2, d5fawb2
        automated match to d5a0uh_
        complexed with cht, mli, na; mutant
    4. Domains for 5fay:
      1. 2434373Domain d5faya1: 5fay A:53-846 [323320]
        Other proteins in same PDB: d5faya2
        automated match to d5a0uh_
        complexed with cht, mli, na; mutant
      2. 2434374Domain d5fayb_: 5fay B: [323361]
        Other proteins in same PDB: d5faya2
        automated match to d5a0uh_
        complexed with cht, mli, na; mutant
    5. Domains for 5kdp:
      1. 2434379Domain d5kdpa1: 5kdp A:53-846 [323421]
        Other proteins in same PDB: d5kdpa2, d5kdpc2
        automated match to d5a0uh_
        complexed with mli, na; mutant
      2. 2434380Domain d5kdpc1: 5kdp C:53-846 [323401]
        Other proteins in same PDB: d5kdpa2, d5kdpc2
        automated match to d5a0uh_
        complexed with mli, na; mutant
    6. Domains for 6nd3:
      1. 3062213Domain d6nd3g_: 6nd3 G: [362275]
        automated match to d5faub_
        complexed with btl
      2. 3062216Domain d6nd3h_: 6nd3 H: [362278]
        automated match to d5faub_
        complexed with btl
      3. 3062223Domain d6nd3b_: 6nd3 B: [362285]
        automated match to d5faub_
        complexed with btl
      4. 3062245Domain d6nd3a_: 6nd3 A: [362307]
        automated match to d5faub_
        complexed with btl
      5. 3062266Domain d6nd3e_: 6nd3 E: [362328]
        automated match to d5faub_
        complexed with btl
      6. 3062357Domain d6nd3f_: 6nd3 F: [362419]
        automated match to d5faub_
        complexed with btl
      7. 3062473Domain d6nd3c_: 6nd3 C: [362535]
        automated match to d5faub_
        complexed with btl
      8. 3062554Domain d6nd3d_: 6nd3 D: [362616]
        automated match to d5faub_
        complexed with btl
  3. 2434381Klebsiella pneumoniae [TaxId:573] [275326] (2 PDB entries)
    1. Domains for 5a0u:
      1. 2434382Domain d5a0ua_: 5a0u A: [275339]
        automated match to d1r9da_
        complexed with cht
      2. 2434383Domain d5a0ub_: 5a0u B: [275336]
        automated match to d1r9da_
        complexed with cht
      3. 2434384Domain d5a0uc_: 5a0u C: [275338]
        automated match to d1r9da_
        complexed with cht
      4. 2434385Domain d5a0ud_: 5a0u D: [275331]
        automated match to d1r9da_
        complexed with cht
      5. 2434386Domain d5a0ue_: 5a0u E: [275330]
        automated match to d1r9da_
        complexed with cht
      6. 2434387Domain d5a0uf_: 5a0u F: [275333]
        automated match to d1r9da_
        complexed with cht
      7. 2434388Domain d5a0ug_: 5a0u G: [275334]
        automated match to d1r9da_
        complexed with cht
      8. 2434389Domain d5a0uh_: 5a0u H: [275337]
        automated match to d1r9da_
        complexed with cht
    2. Domains for 5a0z:
      1. 2434390Domain d5a0za_: 5a0z A: [275329]
        automated match to d1r9da_
      2. 2434391Domain d5a0zb_: 5a0z B: [275335]
        automated match to d1r9da_
      3. 2434392Domain d5a0zc_: 5a0z C: [275332]
        automated match to d1r9da_
      4. 2434393Domain d5a0zd_: 5a0z D: [275328]
        automated match to d1r9da_
  4. 3066591Desulfovibrio vulgaris [TaxId:882] [366653] (1 PDB entry)

More info for Protein automated matches from c.7.1.0: automated matches

Timeline for Protein automated matches from c.7.1.0: automated matches: