Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. 2826024Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2850785Fold c.7: PFL-like glycyl radical enzymes [51997] (1 superfamily)
    contains: barrel, closed; n=10, S=10; accommodates a hairpin loop inside the barrel
  4. 2850786Superfamily c.7.1: PFL-like glycyl radical enzymes [51998] (6 families) (S)
    duplication: the N- and C-terminal halves have similar topologies
  5. 2850879Family c.7.1.0: automated matches [275322] (1 protein)
    not a true family
  6. 2850880Protein automated matches [275324] (7 species)
    not a true protein

Species:

  1. 2850881Archaeoglobus fulgidus [TaxId:2234] [346280] (1 PDB entry)
  2. 2850884Bilophila wadsworthia [TaxId:563192] [388126] (1 PDB entry)
  3. 2850889Clostridioides difficile [TaxId:1002369] [383471] (2 PDB entries)
    1. Domains for 6vxc:
      1. 2850890Domain d6vxca_: 6vxc A: [383475]
        automated match to d5faub_
        complexed with gol
      2. 2850891Domain d6vxcb_: 6vxc B: [383572]
        automated match to d5faub_
        complexed with gol
      3. 2850892Domain d6vxcc_: 6vxc C: [383584]
        automated match to d5faub_
        complexed with gol
      4. 2850893Domain d6vxcd_: 6vxc D: [383578]
        automated match to d5faub_
        complexed with gol
      5. 2850894Domain d6vxce_: 6vxc E: [383582]
        automated match to d5faub_
        complexed with gol
      6. 2850895Domain d6vxcf_: 6vxc F: [383580]
        automated match to d5faub_
        complexed with gol
      7. 2850896Domain d6vxcg_: 6vxc G: [383573]
        automated match to d5faub_
        complexed with gol
      8. 2850897Domain d6vxch_: 6vxc H: [383477]
        automated match to d5faub_
        complexed with gol
    2. Domains for 6vxe:
      1. 2850898Domain d6vxea_: 6vxe A: [383472]
        automated match to d5faub_
        complexed with hyp
      2. 2850899Domain d6vxeb_: 6vxe B: [383581]
        automated match to d5faub_
        complexed with hyp
      3. 2850900Domain d6vxec_: 6vxe C: [383476]
        automated match to d5faub_
        complexed with hyp
      4. 2850901Domain d6vxed_: 6vxe D: [383571]
        automated match to d5faub_
        complexed with hyp
      5. 2850902Domain d6vxee_: 6vxe E: [383478]
        automated match to d5faub_
        complexed with hyp
      6. 2850903Domain d6vxef_: 6vxe F: [383574]
        automated match to d5faub_
        complexed with hyp
      7. 2850904Domain d6vxeg_: 6vxe G: [383579]
        automated match to d5faub_
        complexed with hyp
      8. 2850905Domain d6vxeh_: 6vxe H: [383583]
        automated match to d5faub_
        complexed with hyp
  4. 2850906Desulfovibrio alaskensis [TaxId:207559] [323257] (7 PDB entries)
    1. Domains for 5fau:
      1. 2850913Domain d5faua_: 5fau A: [323369]
        automated match to d5a0uh_
        complexed with cht, gol
      2. 2850914Domain d5faub_: 5fau B: [323412]
        automated match to d5a0uh_
        complexed with cht, gol
      3. 2850915Domain d5fauc_: 5fau C: [323386]
        automated match to d5a0uh_
        complexed with cht, gol
      4. 2850916Domain d5faud_: 5fau D: [323307]
        automated match to d5a0uh_
        complexed with cht, gol
    2. Domains for 5fav:
      1. 2850907Domain d5fava1: 5fav A:53-846 [323342]
        Other proteins in same PDB: d5fava2, d5favb2
        automated match to d5a0uh_
        complexed with mli, na; mutant
      2. 2850908Domain d5favb1: 5fav B:53-846 [323264]
        Other proteins in same PDB: d5fava2, d5favb2
        automated match to d5a0uh_
        complexed with mli, na; mutant
    3. Domains for 5faw:
      1. 2850909Domain d5fawa1: 5faw A:53-846 [323298]
        Other proteins in same PDB: d5fawa2, d5fawb2
        automated match to d5a0uh_
        complexed with cht, mli, na; mutant
      2. 2850910Domain d5fawb1: 5faw B:53-846 [323258]
        Other proteins in same PDB: d5fawa2, d5fawb2
        automated match to d5a0uh_
        complexed with cht, mli, na; mutant
    4. Domains for 5fay:
      1. 2850911Domain d5faya1: 5fay A:53-846 [323320]
        Other proteins in same PDB: d5faya2
        automated match to d5a0uh_
        complexed with cht, mli, na; mutant
      2. 2850912Domain d5fayb_: 5fay B: [323361]
        Other proteins in same PDB: d5faya2
        automated match to d5a0uh_
        complexed with cht, mli, na; mutant
    5. Domains for 5kdp:
      1. 2850917Domain d5kdpa1: 5kdp A:53-846 [323421]
        Other proteins in same PDB: d5kdpa2, d5kdpc2
        automated match to d5a0uh_
        complexed with mli, na; mutant
      2. 2850918Domain d5kdpc1: 5kdp C:53-846 [323401]
        Other proteins in same PDB: d5kdpa2, d5kdpc2
        automated match to d5a0uh_
        complexed with mli, na; mutant
    6. Domains for 6nd3:
      1. 2850921Domain d6nd3a_: 6nd3 A: [362307]
        automated match to d5faub_
        complexed with btl
      2. 2850922Domain d6nd3b_: 6nd3 B: [362285]
        automated match to d5faub_
        complexed with btl
      3. 2850923Domain d6nd3c_: 6nd3 C: [362535]
        automated match to d5faub_
        complexed with btl
      4. 2850924Domain d6nd3d_: 6nd3 D: [362616]
        automated match to d5faub_
        complexed with btl
      5. 2850925Domain d6nd3e_: 6nd3 E: [362328]
        automated match to d5faub_
        complexed with btl
      6. 2850926Domain d6nd3f_: 6nd3 F: [362419]
        automated match to d5faub_
        complexed with btl
      7. 2850927Domain d6nd3g_: 6nd3 G: [362275]
        automated match to d5faub_
        complexed with btl
      8. 2850928Domain d6nd3h_: 6nd3 H: [362278]
        automated match to d5faub_
        complexed with btl
    7. Domains for 6vue:
      1. 2850919Domain d6vuea1: 6vue A:53-846 [395966]
        Other proteins in same PDB: d6vuea2, d6vueb2
        automated match to d5faua_
        complexed with na, rp7
      2. 2850920Domain d6vueb1: 6vue B:53-846 [395963]
        Other proteins in same PDB: d6vuea2, d6vueb2
        automated match to d5faua_
        complexed with na, rp7
  5. 2850929Desulfovibrio vulgaris [TaxId:882] [366653] (1 PDB entry)
  6. 2850934Enterobacter cloacae [TaxId:716541] [393385] (1 PDB entry)
  7. 2850937Klebsiella pneumoniae [TaxId:573] [275326] (2 PDB entries)
    1. Domains for 5a0u:
      1. 2850938Domain d5a0ua_: 5a0u A: [275339]
        automated match to d1r9da_
        complexed with cht
      2. 2850939Domain d5a0ub_: 5a0u B: [275336]
        automated match to d1r9da_
        complexed with cht
      3. 2850940Domain d5a0uc_: 5a0u C: [275338]
        automated match to d1r9da_
        complexed with cht
      4. 2850941Domain d5a0ud_: 5a0u D: [275331]
        automated match to d1r9da_
        complexed with cht
      5. 2850942Domain d5a0ue_: 5a0u E: [275330]
        automated match to d1r9da_
        complexed with cht
      6. 2850943Domain d5a0uf_: 5a0u F: [275333]
        automated match to d1r9da_
        complexed with cht
      7. 2850944Domain d5a0ug_: 5a0u G: [275334]
        automated match to d1r9da_
        complexed with cht
      8. 2850945Domain d5a0uh_: 5a0u H: [275337]
        automated match to d1r9da_
        complexed with cht
    2. Domains for 5a0z:
      1. 2850946Domain d5a0za_: 5a0z A: [275329]
        automated match to d1r9da_
      2. 2850947Domain d5a0zb_: 5a0z B: [275335]
        automated match to d1r9da_
      3. 2850948Domain d5a0zc_: 5a0z C: [275332]
        automated match to d1r9da_
      4. 2850949Domain d5a0zd_: 5a0z D: [275328]
        automated match to d1r9da_

More info for Protein automated matches from c.7.1.0: automated matches

Timeline for Protein automated matches from c.7.1.0: automated matches: