SCOPe 2.07: Domain d4yvga1: 4yvg A:1-246

Lineage for d4yvga1 (4yvg A:1-246)

1. Root: SCOPe 2.07

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.116: alpha/beta knot [75216] (1 superfamily)
   core: 3 layers: a/b/a, parallel beta-sheet of 5 strands, order 21435; contains a deep trefoil knot

4. Superfamily c.116.1: alpha/beta knot [75217] (9 families)
   known or predicted SAM-dependent methytransferases including the SPOUT 'sequence' superfamily
   all known members have dimeric structures

5. Family c.116.1.4: tRNA(m1G37)-methyltransferase TrmD [89629] (2 proteins)
   fold and dimerisation mode are similar to those of the YbeA-like family; contains additional C-terminal all-alpha subdomain

6. Protein automated matches [196235] (4 species)
   not a true protein

7. Species Haemophilus influenzae [TaxId:71421] [196236] (37 PDB entries)

8. Domain d4yvga1: 4yvg A:1-246 [275101]
   Other proteins in same PDB: d4yvga2
   automated match to d1uaja_
   complexed with sam

Details for d4yvga1

PDB Entry: 4yvg, 1.55 Å

PDB Description: crystal structure of h. influenzae trmd in complex with adomet

PDB Compounds: (A:) tRNA (guanine-N(1)-)-methyltransferase

SCOPe Domain Sequences for d4yvga1:

Sequence, based on SEQRES records:

>d4yvga1 c.116.1.4 (A:1-246) automated matches {Haemophilus influenzae [TaxId: 71421]}
mwigvislfpemfkaitefgvtgravkhnllkvecwnprdftfdkhktvddrpygggpgm
lmmvqplrdaihtakaaagegakviylspqgrkldqggvtelaqnqklilvcgryegide
rliqteideewsigdyvltggelpamtlidavarfipgvlgkqasaeedsfadglldcph
ytrpevlegltvppvlmsghheeirkwrlkqslqrtwlrrpelleglaltdeqrkllkea
qaehns

Sequence, based on observed residues (ATOM records):

>d4yvga1 c.116.1.4 (A:1-246) automated matches {Haemophilus influenzae [TaxId: 71421]}
mwigvislfpemfkaitefgvtgravkhnllkvecwnprdftfdkhktvddrpygggpgm
lmmvqplrdaihtakaaagegakviylspqgrkldqggvtelaqnqklilvcgryegide
rliqteideewsigdyvltggelpamtlidavarfipgvldsfadglldcphytrpevle
gltvppvlmsghheeirkwrlkqslqrtwlrrpelleglaltdeqrkllkeaqaehns

Timeline for d4yvga1:

• d4yvga1 first appeared in SCOPe 2.05, called d4yvga_
  
• d4yvga1 appears in SCOPe 2.06
  
• d4yvga1 appears in the current release, SCOPe 2.08