Lineage for d4ydkl1 (4ydk L:1-106)

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2017115Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2017116Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2026644Family b.1.1.0: automated matches [191470] (1 protein)
    not a true family
  6. 2026645Protein automated matches [190740] (24 species)
    not a true protein
  7. 2026747Species Human (Homo sapiens) [TaxId:9606] [187920] (762 PDB entries)
  8. 2027454Domain d4ydkl1: 4ydk L:1-106 [273529]
    Other proteins in same PDB: d4ydkl2
    automated match to d1dn0a1
    complexed with gol, nag, nhe, peg

Details for d4ydkl1

PDB Entry: 4ydk (more details), 2.05 Å

PDB Description: crystal structure of broadly and potently neutralizing antibody c38- vrc16.01 in complex with hiv-1 clade ae strain 93th057 gp120
PDB Compounds: (L:) light chain of antibody c38-vrc16.01

SCOPe Domain Sequences for d4ydkl1:

Sequence; same for both SEQRES and ATOM records: (download)

>d4ydkl1 b.1.1.0 (L:1-106) automated matches {Human (Homo sapiens) [TaxId: 9606]}

SCOPe Domain Coordinates for d4ydkl1:

Click to download the PDB-style file with coordinates for d4ydkl1.
(The format of our PDB-style files is described here.)

Timeline for d4ydkl1: