Lineage for d4ydjl1 (4ydj L:1-107)

  1. Root: SCOPe 2.06
  2. 2021373Class b: All beta proteins [48724] (177 folds)
  3. 2021374Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2021375Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2031996Family b.1.1.0: automated matches [191470] (1 protein)
    not a true family
  6. 2031997Protein automated matches [190740] (28 species)
    not a true protein
  7. 2032126Species Human (Homo sapiens) [TaxId:9606] [187920] (935 PDB entries)
  8. 2033484Domain d4ydjl1: 4ydj L:1-107 [273525]
    Other proteins in same PDB: d4ydjb2, d4ydjl2
    automated match to d1mcww1
    complexed with bu3, cl, ipa, na, nag, peg

Details for d4ydjl1

PDB Entry: 4ydj (more details), 2.31 Å

PDB Description: crystal structure of broadly and potently neutralizing antibody 44- vrc13.01 in complex with hiv-1 clade ae strain 93th057 gp120
PDB Compounds: (L:) light chain of antibody 44-vrc13.01

SCOPe Domain Sequences for d4ydjl1:

Sequence; same for both SEQRES and ATOM records: (download)

>d4ydjl1 b.1.1.0 (L:1-107) automated matches {Human (Homo sapiens) [TaxId: 9606]}

SCOPe Domain Coordinates for d4ydjl1:

Click to download the PDB-style file with coordinates for d4ydjl1.
(The format of our PDB-style files is described here.)

Timeline for d4ydjl1:

View in 3D
Domains from same chain:
(mouse over for more information)