SCOPe 2.08: Domain d4yj2d2: 4yj2 D:246-441

Lineage for d4yj2d2 (4yj2 D:246-441)

1. Root: SCOPe 2.08

2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

3. Fold d.79: Bacillus chorismate mutase-like [55297] (9 superfamilies)
   core: beta-alpha-beta-alpha-beta(2); mixed beta-sheet: order: 1423, strand 4 is antiparallel to the rest

4. Superfamily d.79.2: Tubulin C-terminal domain-like [55307] (2 families)

5. Family d.79.2.1: Tubulin, C-terminal domain [55308] (4 proteins)

6. Protein automated matches [227071] (7 species)
   not a true protein

7. Species Cow (Bos taurus) [TaxId:9913] [226565] (136 PDB entries)

8. Domain d4yj2d2: 4yj2 D:246-441 [273278]
   Other proteins in same PDB: d4yj2a1, d4yj2b1, d4yj2c1, d4yj2d1, d4yj2e_, d4yj2f1, d4yj2f2
   automated match to d3rycd2
   complexed with 4ed, ca, gdp, gol, gtp, imd, mes, mg

Details for d4yj2d2

PDB Entry: 4yj2, 2.6 Å

PDB Description: crystal structure of tubulin bound to mi-181

PDB Compounds: (D:) Tubulin beta-2B chain

SCOPe Domain Sequences for d4yj2d2:

Sequence, based on SEQRES records:

>d4yj2d2 d.79.2.1 (D:246-441) automated matches {Cow (Bos taurus) [TaxId: 9913]}
gqlnadlrklavnmvpfprlhffmpgfapltsrgsqqyraltvpeltqqmfdsknmmaac
dprhgryltvaaifrgrmsmkevdeqmlnvqnknssyfvewipnnvktavcdipprglkm
satfignstaiqelfkriseqftamfrrkaflhwytgegmdemefteaesnmndlvseyq
qyqdatad

Sequence, based on observed residues (ATOM records):

>d4yj2d2 d.79.2.1 (D:246-441) automated matches {Cow (Bos taurus) [TaxId: 9913]}
gqlnadlrklavnmvpfprlhffmpgfaplltvpeltqqmfdsknmmaacdprhgryltv
aaifrgrmsmkevdeqmlnvqnknssyfvewipnnvktavcdipprglkmsatfignsta
iqelfkriseqftamfrrkaflhwytgegmdemefteaesnmndlvseyqqyqdatad

Timeline for d4yj2d2:

• d4yj2d2 first appeared in SCOPe 2.05
  
• d4yj2d2 appears in SCOPe 2.07