Lineage for Species: Phormidium rubidum [TaxId: 865859]

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 1976410Fold a.1: Globin-like [46457] (2 superfamilies)
    core: 6 helices; folded leaf, partly opened
  4. 1976411Superfamily a.1.1: Globin-like [46458] (5 families) (S)
  5. 1978832Family a.1.1.3: Phycocyanin-like phycobilisome proteins [46532] (7 protein domains)
    oligomers of two different types of globin-like subunits containing two extra helices at the N-terminus
    binds a bilin chromophore
    automatically mapped to Pfam PF00502
  6. 1979007Protein automated matches [190531] (18 species)
    not a true protein
  7. 1979081Species Phormidium rubidum [TaxId:865859] [272704] (5 PDB entries)

PDB entries in Species: Phormidium rubidum [TaxId: 865859]:

  1. Domain(s) for 4rmp:
    1. 1979082Domain d4rmpa1: 4rmp A:9-161 [272706]
      Other proteins in same PDB: d4rmpa2, d4rmpb2
      automated match to d3dbja_
      complexed with cyc
    2. 1979083Domain d4rmpb1: 4rmp B:1-155 [272705]
      Other proteins in same PDB: d4rmpa2, d4rmpb2
      automated match to d3dbjb_
      complexed with cyc
  2. Domain(s) for 5aqd:
    1. 2275573Domain d5aqda_: 5aqd A: [318874]
      automated match to d1eyxa_
      complexed with gol, peb, so4
    2. 2275580Domain d5aqdf_: 5aqd F: [318881]
      automated match to d1eyxa_
      complexed with gol, peb, so4
    3. 2275581Domain d5aqdb_: 5aqd B: [318882]
      automated match to d1eyxa_
      complexed with gol, peb, so4
    4. 2275582Domain d5aqdm_: 5aqd M: [318883]
      automated match to d3v57b_
      complexed with gol, peb, so4
    5. 2275589Domain d5aqdg_: 5aqd G: [318890]
      automated match to d1eyxa_
      complexed with gol, peb, so4
    6. 2275591Domain d5aqdo_: 5aqd O: [318892]
      automated match to d3v57b_
      complexed with gol, peb, so4
    7. 2275592Domain d5aqdk_: 5aqd K: [318893]
      automated match to d1eyxa_
      complexed with gol, peb, so4
    8. 2275618Domain d5aqdl_: 5aqd L: [318919]
      automated match to d1eyxa_
      complexed with gol, peb, so4
    9. 2275625Domain d5aqdp_: 5aqd P: [318926]
      automated match to d3v57b_
      complexed with gol, peb, so4
    10. 2275650Domain d5aqdj_: 5aqd J: [318951]
      automated match to d1eyxa_
      complexed with gol, peb, so4
    11. 2275681Domain d5aqdv_: 5aqd V: [318982]
      automated match to d3v57b_
      complexed with gol, peb, so4
    12. 2275683Domain d5aqdx_: 5aqd X: [318984]
      automated match to d3v57b_
      complexed with gol, peb, so4
    13. 2275687Domain d5aqdq_: 5aqd Q: [318988]
      automated match to d3v57b_
      complexed with gol, peb, so4
    14. 2275697Domain d5aqdr_: 5aqd R: [318998]
      automated match to d3v57b_
      complexed with gol, peb, so4
    15. 2275698Domain d5aqdt_: 5aqd T: [318999]
      automated match to d3v57b_
      complexed with gol, peb, so4
    16. 2275712Domain d5aqde_: 5aqd E: [319013]
      automated match to d1eyxa_
      complexed with gol, peb, so4
    17. 2275716Domain d5aqdw_: 5aqd W: [319017]
      automated match to d3v57b_
      complexed with gol, peb, so4
    18. 2275720Domain d5aqdu_: 5aqd U: [319021]
      automated match to d3v57b_
      complexed with gol, peb, so4
    19. 2275762Domain d5aqdh_: 5aqd H: [319063]
      automated match to d1eyxa_
      complexed with gol, peb, so4
    20. 2275840Domain d5aqdd_: 5aqd D: [319141]
      automated match to d1eyxa_
      complexed with gol, peb, so4
    21. 2275893Domain d5aqdi_: 5aqd I: [319194]
      automated match to d1eyxa_
      complexed with gol, peb, so4
    22. 2275899Domain d5aqdc_: 5aqd C: [319200]
      automated match to d1eyxa_
      complexed with gol, peb, so4
    23. 2275913Domain d5aqdn_: 5aqd N: [319214]
      automated match to d3v57b_
      complexed with gol, peb, so4
    24. 2275920Domain d5aqds_: 5aqd S: [319221]
      automated match to d3v57b_
      complexed with gol, peb, so4
  3. Domain(s) for 5fvb:
    1. 2275640Domain d5fvbh_: 5fvb H: [318941]
      automated match to d1eyxa_
      complexed with gol, peb
    2. 2275648Domain d5fvbi_: 5fvb I: [318949]
      automated match to d1eyxa_
      complexed with gol, peb
    3. 2275659Domain d5fvbu_: 5fvb U: [318960]
      automated match to d3v57b_
      complexed with gol, peb
    4. 2275668Domain d5fvbs_: 5fvb S: [318969]
      automated match to d3v57b_
      complexed with gol, peb
    5. 2275686Domain d5fvbp_: 5fvb P: [318987]
      automated match to d3v57b_
      complexed with gol, peb
    6. 2275688Domain d5fvbv_: 5fvb V: [318989]
      automated match to d3v57b_
      complexed with gol, peb
    7. 2275695Domain d5fvbo_: 5fvb O: [318996]
      automated match to d3v57b_
      complexed with gol, peb
    8. 2275696Domain d5fvbw_: 5fvb W: [318997]
      automated match to d3v57b_
      complexed with gol, peb
    9. 2275700Domain d5fvbt_: 5fvb T: [319001]
      automated match to d3v57b_
      complexed with gol, peb
    10. 2275701Domain d5fvbk_: 5fvb K: [319002]
      automated match to d1eyxa_
      complexed with gol, peb
    11. 2275721Domain d5fvbn_: 5fvb N: [319022]
      automated match to d3v57b_
      complexed with gol, peb
    12. 2275722Domain d5fvbf_: 5fvb F: [319023]
      automated match to d1eyxa_
      complexed with gol, peb
    13. 2275723Domain d5fvbb_: 5fvb B: [319024]
      automated match to d1eyxa_
      complexed with gol, peb
    14. 2275725Domain d5fvbe_: 5fvb E: [319026]
      automated match to d1eyxa_
      complexed with gol, peb
    15. 2275728Domain d5fvbl_: 5fvb L: [319029]
      automated match to d1eyxa_
      complexed with gol, peb
    16. 2275729Domain d5fvbc_: 5fvb C: [319030]
      automated match to d1eyxa_
      complexed with gol, peb
    17. 2275733Domain d5fvbg_: 5fvb G: [319034]
      automated match to d1eyxa_
      complexed with gol, peb
    18. 2275747Domain d5fvbx_: 5fvb X: [319048]
      automated match to d3v57b_
      complexed with gol, peb
    19. 2275755Domain d5fvbq_: 5fvb Q: [319056]
      automated match to d3v57b_
      complexed with gol, peb
    20. 2275785Domain d5fvbj_: 5fvb J: [319086]
      automated match to d1eyxa_
      complexed with gol, peb
    21. 2275801Domain d5fvbd_: 5fvb D: [319102]
      automated match to d1eyxa_
      complexed with gol, peb
    22. 2275808Domain d5fvba_: 5fvb A: [319109]
      automated match to d1eyxa_
      complexed with gol, peb
    23. 2275824Domain d5fvbm_: 5fvb M: [319125]
      automated match to d3v57b_
      complexed with gol, peb
    24. 2275850Domain d5fvbr_: 5fvb R: [319151]
      automated match to d3v57b_
      complexed with gol, peb
  4. Domain(s) for 5nb3:
    1. 2296219Domain d5nb3w_: 5nb3 W: [339520]
      automated match to d3v57b_
      complexed with cl, fmt, mpd, mrd, na, peb
    2. 2296220Domain d5nb3l_: 5nb3 L: [339521]
      automated match to d1eyxa_
      complexed with cl, fmt, mpd, mrd, na, peb
    3. 2296221Domain d5nb3m_: 5nb3 M: [339522]
      automated match to d3v57b_
      complexed with cl, fmt, mpd, mrd, na, peb
    4. 2296222Domain d5nb3u_: 5nb3 U: [339523]
      automated match to d3v57b_
      complexed with cl, fmt, mpd, mrd, na, peb
    5. 2296223Domain d5nb3t_: 5nb3 T: [339524]
      automated match to d3v57b_
      complexed with cl, fmt, mpd, mrd, na, peb
    6. 2296224Domain d5nb3d_: 5nb3 D: [339525]
      automated match to d1eyxa_
      complexed with cl, fmt, mpd, mrd, na, peb
    7. 2296225Domain d5nb3o_: 5nb3 O: [339526]
      automated match to d3v57b_
      complexed with cl, fmt, mpd, mrd, na, peb
    8. 2296229Domain d5nb3f_: 5nb3 F: [339530]
      automated match to d1eyxa_
      complexed with cl, fmt, mpd, mrd, na, peb
    9. 2296230Domain d5nb3a_: 5nb3 A: [339531]
      automated match to d1eyxa_
      complexed with cl, fmt, mpd, mrd, na, peb
    10. 2296231Domain d5nb3p_: 5nb3 P: [339532]
      automated match to d3v57b_
      complexed with cl, fmt, mpd, mrd, na, peb
    11. 2296232Domain d5nb3q_: 5nb3 Q: [339533]
      automated match to d3v57b_
      complexed with cl, fmt, mpd, mrd, na, peb
    12. 2296233Domain d5nb3k_: 5nb3 K: [339534]
      automated match to d1eyxa_
      complexed with cl, fmt, mpd, mrd, na, peb
    13. 2296234Domain d5nb3n_: 5nb3 N: [339535]
      automated match to d3v57b_
      complexed with cl, fmt, mpd, mrd, na, peb
    14. 2296235Domain d5nb3h_: 5nb3 H: [339536]
      automated match to d1eyxa_
      complexed with cl, fmt, mpd, mrd, na, peb
    15. 2296243Domain d5nb3b_: 5nb3 B: [339544]
      automated match to d1eyxa_
      complexed with cl, fmt, mpd, mrd, na, peb
    16. 2296252Domain d5nb3s_: 5nb3 S: [339553]
      automated match to d3v57b_
      complexed with cl, fmt, mpd, mrd, na, peb
    17. 2296255Domain d5nb3j_: 5nb3 J: [339556]
      automated match to d1eyxa_
      complexed with cl, fmt, mpd, mrd, na, peb
    18. 2296258Domain d5nb3g_: 5nb3 G: [339559]
      automated match to d1eyxa_
      complexed with cl, fmt, mpd, mrd, na, peb
    19. 2296265Domain d5nb3e_: 5nb3 E: [339566]
      automated match to d1eyxa_
      complexed with cl, fmt, mpd, mrd, na, peb
    20. 2296271Domain d5nb3x_: 5nb3 X: [339572]
      automated match to d3v57b_
      complexed with cl, fmt, mpd, mrd, na, peb
    21. 2296278Domain d5nb3r_: 5nb3 R: [339579]
      automated match to d3v57b_
      complexed with cl, fmt, mpd, mrd, na, peb
    22. 2296299Domain d5nb3i_: 5nb3 I: [339600]
      automated match to d1eyxa_
      complexed with cl, fmt, mpd, mrd, na, peb
    23. 2296312Domain d5nb3c_: 5nb3 C: [339613]
      automated match to d1eyxa_
      complexed with cl, fmt, mpd, mrd, na, peb
    24. 2296325Domain d5nb3v_: 5nb3 V: [339626]
      automated match to d3v57b_
      complexed with cl, fmt, mpd, mrd, na, peb
  5. Domain(s) for 5nb4:
    1. 2296246Domain d5nb4c_: 5nb4 C: [339547]
      automated match to d1eyxa_
      complexed with mpd, mrd, na, no3, peb, pi
    2. 2296248Domain d5nb4b_: 5nb4 B: [339549]
      automated match to d1eyxa_
      complexed with mpd, mrd, na, no3, peb, pi
    3. 2296250Domain d5nb4j_: 5nb4 J: [339551]
      automated match to d1eyxa_
      complexed with mpd, mrd, na, no3, peb, pi
    4. 2296253Domain d5nb4n_: 5nb4 N: [339554]
      automated match to d3v57b_
      complexed with mpd, mrd, na, no3, peb, pi
    5. 2296259Domain d5nb4m_: 5nb4 M: [339560]
      automated match to d3v57b_
      complexed with mpd, mrd, na, no3, peb, pi
    6. 2296260Domain d5nb4i_: 5nb4 I: [339561]
      automated match to d1eyxa_
      complexed with mpd, mrd, na, no3, peb, pi
    7. 2296263Domain d5nb4t_: 5nb4 T: [339564]
      automated match to d3v57b_
      complexed with mpd, mrd, na, no3, peb, pi
    8. 2296266Domain d5nb4x_: 5nb4 X: [339567]
      automated match to d3v57b_
      complexed with mpd, mrd, na, no3, peb, pi
    9. 2296267Domain d5nb4s_: 5nb4 S: [339568]
      automated match to d3v57b_
      complexed with mpd, mrd, na, no3, peb, pi
    10. 2296268Domain d5nb4a_: 5nb4 A: [339569]
      automated match to d1eyxa_
      complexed with mpd, mrd, na, no3, peb, pi
    11. 2296269Domain d5nb4w_: 5nb4 W: [339570]
      automated match to d3v57b_
      complexed with mpd, mrd, na, no3, peb, pi
    12. 2296272Domain d5nb4o_: 5nb4 O: [339573]
      automated match to d3v57b_
      complexed with mpd, mrd, na, no3, peb, pi
    13. 2296277Domain d5nb4d_: 5nb4 D: [339578]
      automated match to d1eyxa_
      complexed with mpd, mrd, na, no3, peb, pi
    14. 2296288Domain d5nb4k_: 5nb4 K: [339589]
      automated match to d1eyxa_
      complexed with mpd, mrd, na, no3, peb, pi
    15. 2296291Domain d5nb4q_: 5nb4 Q: [339592]
      automated match to d3v57b_
      complexed with mpd, mrd, na, no3, peb, pi
    16. 2296294Domain d5nb4v_: 5nb4 V: [339595]
      automated match to d3v57b_
      complexed with mpd, mrd, na, no3, peb, pi
    17. 2296295Domain d5nb4g_: 5nb4 G: [339596]
      automated match to d1eyxa_
      complexed with mpd, mrd, na, no3, peb, pi
    18. 2296296Domain d5nb4h_: 5nb4 H: [339597]
      automated match to d1eyxa_
      complexed with mpd, mrd, na, no3, peb, pi
    19. 2296298Domain d5nb4u_: 5nb4 U: [339599]
      automated match to d3v57b_
      complexed with mpd, mrd, na, no3, peb, pi
    20. 2296319Domain d5nb4f_: 5nb4 F: [339620]
      automated match to d1eyxa_
      complexed with mpd, mrd, na, no3, peb, pi
    21. 2296320Domain d5nb4e_: 5nb4 E: [339621]
      automated match to d1eyxa_
      complexed with mpd, mrd, na, no3, peb, pi
    22. 2296321Domain d5nb4l_: 5nb4 L: [339622]
      automated match to d1eyxa_
      complexed with mpd, mrd, na, no3, peb, pi
    23. 2296324Domain d5nb4r_: 5nb4 R: [339625]
      automated match to d3v57b_
      complexed with mpd, mrd, na, no3, peb, pi
    24. 2296327Domain d5nb4p_: 5nb4 P: [339628]
      automated match to d3v57b_
      complexed with mpd, mrd, na, no3, peb, pi

More info for Species Phormidium rubidum [TaxId:865859] from a.1.1.3 automated matches

Timeline for Species Phormidium rubidum [TaxId:865859] from a.1.1.3 automated matches: