SCOPe 2.07: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.07
Class b: All beta proteins [48724] (178 folds)
Fold b.2: Common fold of diphtheria toxin/transcription factors/cytochrome f [49379] (9 superfamilies)
sandwich; 9 strands in 2 sheet; greek-key; subclass of immunoglobin-like fold
Superfamily b.2.9: Peptidylarginine deiminase Pad4, middle domain [110083] (2 families)
automatically mapped to Pfam PF08527
Family b.2.9.0: automated matches [272207] (1 protein)
not a true family
Protein automated matches [272208] (1 species)
not a true protein

Species:

Human (Homo sapiens) [TaxId:9606] [272209] (26 PDB entries)
1. Domain for 4n20:
  - Domain d4n20a2: 4n20 A:116-294 [272244]
    Other proteins in same PDB: d4n20a1, d4n20a3, d4n20a4
    automated match to d2dexx1
    complexed with act, ca, mpd
2. Domain for 4n22:
  - Domain d4n22a2: 4n22 A:116-294 [272230]
    Other proteins in same PDB: d4n22a1, d4n22a3, d4n22a4
    automated match to d2dexx1
    complexed with act, ca, gol, mpd
3. Domain for 4n24:
  - Domain d4n24a2: 4n24 A:116-294 [272239]
    Other proteins in same PDB: d4n24a1, d4n24a3, d4n24a4
    automated match to d2dexx1
    complexed with act, ca, gol, mpd, mrd
4. Domain for 4n25:
  - Domain d4n25a2: 4n25 A:116-294 [272260]
    Other proteins in same PDB: d4n25a1, d4n25a3, d4n25a4
    automated match to d2dexx1
    complexed with act, ca, mpd, mrd
5. Domain for 4n26:
  - Domain d4n26a2: 4n26 A:116-294 [272237]
    Other proteins in same PDB: d4n26a1, d4n26a3, d4n26a4
    automated match to d2dexx1
    complexed with act, ca, mpd
6. Domain for 4n28:
  - Domain d4n28a2: 4n28 A:116-294 [272257]
    Other proteins in same PDB: d4n28a1, d4n28a3, d4n28a4
    automated match to d2dexx1
    complexed with act, ca, mpd
7. Domain for 4n2a:
  - Domain d4n2aa2: 4n2a A:116-294 [272252]
    Other proteins in same PDB: d4n2aa1, d4n2aa3, d4n2aa4
    automated match to d2dexx1
    complexed with act, ca, mpd
8. Domain for 4n2b:
  - Domain d4n2ba2: 4n2b A:116-294 [272221]
    Other proteins in same PDB: d4n2ba1, d4n2ba3, d4n2ba4
    automated match to d2dexx1
    complexed with ca, mpd
9. Domain for 4n2c:
  - Domain d4n2ca2: 4n2c A:116-294 [272263]
    Other proteins in same PDB: d4n2ca1, d4n2ca3
    automated match to d2dexx1
    complexed with ca
10. Domain for 4n2d:
  - Domain d4n2da2: 4n2d A:116-294 [272253]
    Other proteins in same PDB: d4n2da1, d4n2da3, d4n2da4
    automated match to d2dexx1
    complexed with ca, mpd
11. Domain for 4n2e:
  - Domain d4n2ea2: 4n2e A:116-294 [272224]
    Other proteins in same PDB: d4n2ea1, d4n2ea3, d4n2ea4
    automated match to d2dexx1
    complexed with ca, mpd
12. Domain for 4n2f:
  - Domain d4n2fa2: 4n2f A:116-294 [272215]
    Other proteins in same PDB: d4n2fa1, d4n2fa3, d4n2fa4
    automated match to d2dexx1
    complexed with act, ca, mpd
13. Domain for 4n2g:
  - Domain d4n2ga2: 4n2g A:116-294 [272210]
    Other proteins in same PDB: d4n2ga1, d4n2ga3, d4n2ga4
    automated match to d2dexx1
    complexed with act, ca, gol, mpd
14. Domain for 4n2h:
  - Domain d4n2ha2: 4n2h A:116-294 [272223]
    Other proteins in same PDB: d4n2ha1, d4n2ha3, d4n2ha4
    automated match to d2dexx1
    complexed with ca, mpd
15. Domain for 4n2i:
  - Domain d4n2ia2: 4n2i A:116-294 [272211]
    Other proteins in same PDB: d4n2ia1, d4n2ia3, d4n2ia4
    automated match to d2dexx1
    complexed with act, ca, mpd
16. Domain for 4n2k:
  - Domain d4n2ka2: 4n2k A:116-294 [272235]
    Other proteins in same PDB: d4n2ka1, d4n2ka3, d4n2ka4
    automated match to d2dexx1
    complexed with ca, gol, mpd
17. Domain for 4n2l:
  - Domain d4n2la2: 4n2l A:116-294 [272245]
    Other proteins in same PDB: d4n2la1, d4n2la3, d4n2la4
    automated match to d2dexx1
    complexed with act, ca, mpd
18. Domain for 4n2m:
  - Domain d4n2ma2: 4n2m A:116-294 [272222]
    Other proteins in same PDB: d4n2ma1, d4n2ma3, d4n2ma4
    automated match to d2dexx1
    complexed with act, ca, mpd
19. Domain for 4n2n:
  - Domain d4n2na2: 4n2n A:116-294 [272248]
    Other proteins in same PDB: d4n2na1, d4n2na3, d4n2na4
    automated match to d2dexx1
    complexed with act, ca, mpd
20. Domain for 6ce1:
  - Domain d6ce1a2: 6ce1 A:115-293 [364834]
    Other proteins in same PDB: d6ce1a1, d6ce1a3
    automated match to d2dexx1
21. Domains for 7d4y:
  1. Domain d7d4ya2: 7d4y A:115-293 [404893]
    Other proteins in same PDB: d7d4ya1, d7d4ya3, d7d4yb1, d7d4yb3
    automated match to d2dexx1
  2. Domain d7d4yb2: 7d4y B:115-293 [404825]
    Other proteins in same PDB: d7d4ya1, d7d4ya3, d7d4yb1, d7d4yb3
    automated match to d2dexx1
22. Domains for 7d56:
  1. Domain d7d56a2: 7d56 A:115-293 [405022]
    Other proteins in same PDB: d7d56a1, d7d56a3, d7d56b1, d7d56b3, d7d56c1, d7d56c3
    automated match to d2dexx1
    complexed with bfb, ca, cl, edo, gol
  2. Domain d7d56b2: 7d56 B:115-293 [404923]
    Other proteins in same PDB: d7d56a1, d7d56a3, d7d56b1, d7d56b3, d7d56c1, d7d56c3
    automated match to d2dexx1
    complexed with bfb, ca, cl, edo, gol
  3. Domain d7d56c2: 7d56 C:115-293 [405071]
    Other proteins in same PDB: d7d56a1, d7d56a3, d7d56b1, d7d56b3, d7d56c1, d7d56c3
    automated match to d2dexx1
    complexed with bfb, ca, cl, edo, gol
23. Domains for 7d5r:
  1. Domain d7d5ra2: 7d5r A:115-293 [404927]
    Other proteins in same PDB: d7d5ra1, d7d5ra3, d7d5rb1, d7d5rb3
    automated match to d2dexx1
    complexed with ca, cl, gol; mutant
  2. Domain d7d5rb2: 7d5r B:115-293 [404973]
    Other proteins in same PDB: d7d5ra1, d7d5ra3, d7d5rb1, d7d5rb3
    automated match to d2dexx1
    complexed with ca, cl, gol; mutant
24. Domains for 7d5v:
  1. Domain d7d5va2: 7d5v A:115-293 [404919]
    Other proteins in same PDB: d7d5va1, d7d5va3, d7d5vb1, d7d5vb3
    automated match to d2dexx1
    complexed with edo, gol; mutant
  2. Domain d7d5vb2: 7d5v B:115-293 [404994]
    Other proteins in same PDB: d7d5va1, d7d5va3, d7d5vb1, d7d5vb3
    automated match to d2dexx1
    complexed with edo, gol; mutant
25. Domains for 7d8n:
  1. Domain d7d8na2: 7d8n A:115-293 [405040]
    Other proteins in same PDB: d7d8na1, d7d8na3, d7d8nb1, d7d8nb3
    automated match to d2dexx1
    complexed with ca, cl, gol
  2. Domain d7d8nb2: 7d8n B:115-293 [405217]
    Other proteins in same PDB: d7d8na1, d7d8na3, d7d8nb1, d7d8nb3
    automated match to d2dexx1
    complexed with ca, cl, gol
26. Domains for 7dan:
  1. Domain d7dana2: 7dan A:115-293 [405027]
    Other proteins in same PDB: d7dana1, d7dana3, d7danb1, d7danb3, d7danc1, d7danc3
    automated match to d2dexx1
    complexed with ca, cl, edo, gol
  2. Domain d7danb2: 7dan B:115-293 [404932]
    Other proteins in same PDB: d7dana1, d7dana3, d7danb1, d7danb3, d7danc1, d7danc3
    automated match to d2dexx1
    complexed with ca, cl, edo, gol
  3. Domain d7danc2: 7dan C:115-293 [404911]
    Other proteins in same PDB: d7dana1, d7dana3, d7danb1, d7danb3, d7danc1, d7danc3
    automated match to d2dexx1
    complexed with ca, cl, edo, gol

More info for Protein automated matches from b.2.9.0: automated matches

Timeline for Protein automated matches from b.2.9.0: automated matches:

Protein automated matches from b.2.9.0: automated matches first appeared in SCOPe 2.05
Protein automated matches from b.2.9.0: automated matches appears in SCOPe 2.06
Protein automated matches from b.2.9.0: automated matches appears in the current release, SCOPe 2.08