SCOPe 2.07: Domain d4y0mj1: 4y0m J:88-301

Lineage for d4y0mj1 (4y0m J:88-301)

1. Root: SCOPe 2.07

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.94: Periplasmic binding protein-like II [53849] (1 superfamily)
   consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
   mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest

4. Superfamily c.94.1: Periplasmic binding protein-like II [53850] (4 families)
   Similar in architecture to the superfamily I but partly differs in topology

5. Family c.94.1.0: automated matches [191309] (1 protein)
   not a true family

6. Protein automated matches [190039] (158 species)
   not a true protein

7. Species Pseudomonas aeruginosa, PA01 [TaxId:208964] [196922] (8 PDB entries)

8. Domain d4y0mj1: 4y0m J:88-301 [272035]
   Other proteins in same PDB: d4y0ma2, d4y0mc2, d4y0md2, d4y0mg2, d4y0mh2, d4y0mi2, d4y0mj2, d4y0ml2
   automated match to d1i6aa_

Details for d4y0mj1

PDB Entry: 4y0m, 2.3 Å

PDB Description: the reduced form of oxyr regulatory domain from psedomonas aeruginosa

PDB Compounds: (J:) OxyR

SCOPe Domain Sequences for d4y0mj1:

Sequence, based on SEQRES records:

>d4y0mj1 c.94.1.0 (J:88-301) automated matches {Pseudomonas aeruginosa, PA01 [TaxId: 208964]}
qlaaplkvgaiytigpylfphlipqlhrvapqmplyieenfthilrdklrtgeldaiiia
lpfqeadvltkplfdepfyvlmpadhpwtakasidsellndksllllgeghcfrdqvlea
cptvrkgdenkhttvesssletirhmvasglgvsvlpfsavdshhyapgvievrpfsapv
pfrtvaiawrasfprpraievladsirlcsvarp

Sequence, based on observed residues (ATOM records):

>d4y0mj1 c.94.1.0 (J:88-301) automated matches {Pseudomonas aeruginosa, PA01 [TaxId: 208964]}
qlaaplkvgaiytigpylfphlipqlhrvapqmplyieenfthilrdklrtgeldaiiia
lpfqeadvltkplfdepfyvlmpadhpwtakasidsellndksllllgeghcfrdqvlea
cptvkhttvesssletirhmvasglgvsvlpfsavdshhyapgvievrpfsapvpfrtva
iawrasfprpraievladsirlcsvarp

Timeline for d4y0mj1:

• d4y0mj1 first appeared in SCOPe 2.05, called d4y0mj_
  
• d4y0mj1 appears in SCOPe 2.06
  
• d4y0mj1 appears in the current release, SCOPe 2.08