Lineage for d4y0md1 (4y0m D:88-297)

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2144291Fold c.94: Periplasmic binding protein-like II [53849] (1 superfamily)
    consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
    mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest
  4. 2144292Superfamily c.94.1: Periplasmic binding protein-like II [53850] (4 families) (S)
    Similar in architecture to the superfamily I but partly differs in topology
  5. 2145531Family c.94.1.0: automated matches [191309] (1 protein)
    not a true family
  6. 2145532Protein automated matches [190039] (138 species)
    not a true protein
  7. 2146113Species Pseudomonas aeruginosa, PA01 [TaxId:208964] [196922] (6 PDB entries)
  8. 2146125Domain d4y0md1: 4y0m D:88-297 [272031]
    Other proteins in same PDB: d4y0ma2, d4y0mc2, d4y0md2, d4y0mg2, d4y0mh2, d4y0mi2, d4y0mj2, d4y0ml2
    automated match to d1i6aa_

Details for d4y0md1

PDB Entry: 4y0m (more details), 2.3 Å

PDB Description: the reduced form of oxyr regulatory domain from psedomonas aeruginosa
PDB Compounds: (D:) OxyR

SCOPe Domain Sequences for d4y0md1:

Sequence, based on SEQRES records: (download)

>d4y0md1 c.94.1.0 (D:88-297) automated matches {Pseudomonas aeruginosa, PA01 [TaxId: 208964]}
qlaaplkvgaiytigpylfphlipqlhrvapqmplyieenfthilrdklrtgeldaiiia
lpfqeadvltkplfdepfyvlmpadhpwtakasidsellndksllllgeghcfrdqvlea
cptvrkgdenkhttvesssletirhmvasglgvsvlpfsavdshhyapgvievrpfsapv
pfrtvaiawrasfprpraievladsirlcs

Sequence, based on observed residues (ATOM records): (download)

>d4y0md1 c.94.1.0 (D:88-297) automated matches {Pseudomonas aeruginosa, PA01 [TaxId: 208964]}
qlaaplkvgaiytigpylfphlipqlhrvapqmplyieenfthilrdklrtgeldaiiia
lpfqeadvltkplfdepfyvlmpadhpwtakasidsellndksllllgeghcfrdqvlea
cpkhttvesssletirhmvasglgvsvlpfsavdshhyapgvievrpfsapvpfrtvaia
wrasfprpraievladsirlcs

SCOPe Domain Coordinates for d4y0md1:

Click to download the PDB-style file with coordinates for d4y0md1.
(The format of our PDB-style files is described here.)

Timeline for d4y0md1:

  • d4y0md1 first appeared in SCOPe 2.05, called d4y0md_