SCOPe 2.05: Domain d4x17d_: 4x17 D:

Lineage for d4x17d_ (4x17 D:)

1. Root: SCOPe 2.05

2. Class b: All beta proteins [48724] (176 folds)

3. Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
   sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
   characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies

4. Superfamily b.121.6: Group I dsDNA viruses [88648] (2 families)

5. Family b.121.6.1: Papovaviridae-like VP [88649] (3 proteins)

6. Protein automated matches [191200] (6 species)
   not a true protein

7. Species Jc polyomavirus [TaxId:10632] [270722] (7 PDB entries)

8. Domain d4x17d_: 4x17 D: [271758]
   automated match to d4mbzj_
   complexed with edo, gol, k, sia

Details for d4x17d_

PDB Entry: 4x17, 1.75 Å

PDB Description: jc mad-1 polyomavirus vp1 in complex with gd1b oligosaccharide

PDB Compounds: (D:) Major capsid protein VP1

SCOPe Domain Sequences for d4x17d_:

Sequence, based on SEQRES records:

>d4x17d_ b.121.6.1 (D:) automated matches {Jc polyomavirus [TaxId: 10632]}
vevlevktgvdsitevecfltpemgdpdehlrgfsksisisdtfesdspnrdmlpcysva
riplpnlnedltcgnilmweavtlktevigvtslmnvhsngqathdngagkpvqgtsfhf
fsvggealelqgvlfnyrtkypdgtifpknatvqsqvmntehkayldknkaypvecwvpd
ptrnentryfgtltggenvppvlhitntattvlldefgvgplckgdnlylsavdvcgmft
nrsgsqqwrglsryfkvqlrkrrvk

Sequence, based on observed residues (ATOM records):

>d4x17d_ b.121.6.1 (D:) automated matches {Jc polyomavirus [TaxId: 10632]}
vevlevktgvdsitevecfltpemgdpdehlrgfsksisisdtfesdspnrdmlpcysva
riplpnlilmweavtlktevigvtslmnvhsngqathdngagkpvqgtsfhffsvggeal
elqgvlfnyrtkypdgtifpknatvqsqvmntehkayldknkaypvecwvpdptrnentr
yfgtltggenvppvlhitntattvlldefgvgplckgdnlylsavdvcgmftnrsgsqqw
rglsryfkvqlrkrrvk

Timeline for d4x17d_:

• d4x17d_ is new in SCOPe 2.05-stable
  
• d4x17d_ appears in SCOPe 2.06
  
• d4x17d_ appears in the current release, SCOPe 2.08