SCOPe 2.07: Domain d4cvka2: 4cvk A:101-319

Lineage for d4cvka2 (4cvk A:101-319)

1. Root: SCOPe 2.07

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.72: Ribokinase-like [53612] (3 superfamilies)
   core: 3 layers: a/b/a; mixed beta-sheet of 8 strands, order 21345678, strand 7 is antiparallel to the rest
   potential superfamily: members of this fold have similar functions but different ATP-binding sites

4. Superfamily c.72.2: MurD-like peptide ligases, catalytic domain [53623] (3 families)
   has extra strand located between strands 1 and 2

5. Family c.72.2.0: automated matches [254328] (1 protein)
   not a true family

6. Protein automated matches [254749] (4 species)
   not a true protein

7. Species Pseudomonas aeruginosa, PA01 [TaxId:208964] [271624] (6 PDB entries)

8. Domain d4cvka2: 4cvk A:101-319 [271627]
   Other proteins in same PDB: d4cvka1, d4cvka3
   automated match to d1gg4a4
   complexed with ala, api, fga, mub, udp

Details for d4cvka2

PDB Entry: 4cvk, 1.92 Å

PDB Description: pamurf in complex with udp-murnac-tripeptide (mdap)

PDB Compounds: (A:) udp-n-acetylmuramoyl-tripeptide--d-alanyl-d-alanine ligase

SCOPe Domain Sequences for d4cvka2:

Sequence, based on SEQRES records:

>d4cvka2 c.72.2.0 (A:101-319) automated matches {Pseudomonas aeruginosa, PA01 [TaxId: 208964]}
tgplaamtgssgkttvkemlasilrtqagdaesvlatrgnlnndlgvpltllqlapqhrs
avielgasrigeiaytveltrphvaiitnagtahvgefggpekiveakgeileglaadgt
avlnlddkafdtwkarasgrplltfsldrpqadfraadlqrdargcmgfrlqgvageaqv
qlnllgrhnvanalaaaaaahalgvpldgivaglqalqp

Sequence, based on observed residues (ATOM records):

>d4cvka2 c.72.2.0 (A:101-319) automated matches {Pseudomonas aeruginosa, PA01 [TaxId: 208964]}
tgplaamtgssgkttvkemlasilrtqagdaesvlatrgnlnndlgvpltllqlapqhrs
avielgasrigeiaytveltrphvaiitnafggpekiveakgeileglaadgtavlnldd
kafdtwkarasgrplltfsldrpqadfraadlqrdargcmgfrlqgvageaqvqlnllgr
hnvanalaaaaaahalgvpldgivaglqalqp

Timeline for d4cvka2:

• d4cvka2 first appeared in SCOPe 2.05
  
• d4cvka2 appears in SCOPe 2.06
  
• d4cvka2 appears in the current release, SCOPe 2.08