Lineage for d4rn0a1 (4rn0 A:14-377)

  1. Root: SCOPe 2.08
  2. 2826024Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2873861Fold c.42: Arginase/deacetylase [52767] (1 superfamily)
    3 layers: a/b/a, parallel beta-sheet of 8 strands, order 21387456
  4. 2873862Superfamily c.42.1: Arginase/deacetylase [52768] (3 families) (S)
  5. 2874190Family c.42.1.2: Histone deacetylase, HDAC [52773] (4 proteins)
    automatically mapped to Pfam PF00850
  6. 2874235Protein automated matches [190786] (1 species)
    not a true protein
  7. 2874236Species Human (Homo sapiens) [TaxId:9606] [188039] (41 PDB entries)
  8. 2874255Domain d4rn0a1: 4rn0 A:14-377 [271228]
    Other proteins in same PDB: d4rn0a2, d4rn0b2
    automated match to d4qa0a_
    complexed with gol, imd, k, l6g, zn

Details for d4rn0a1

PDB Entry: 4rn0 (more details), 1.76 Å

PDB Description: crystal structure of s39d hdac8 in complex with a largazole analogue.
PDB Compounds: (A:) Histone deacetylase 8

SCOPe Domain Sequences for d4rn0a1:

Sequence, based on SEQRES records: (download)

>d4rn0a1 c.42.1.2 (A:14-377) automated matches {Human (Homo sapiens) [TaxId: 9606]}
lvpvyiyspeyvsmcdslakipkradmvhslieayalhkqmrivkpkvasmeematfhtd
aylqhlqkvsqegdddhpdsieyglgydcpategifdyaaaiggatitaaqclidgmckv
ainwsggwhhakkdeasgfcylndavlgilrlrrkferilyvdldlhhgdgvedafsfts
kvmtvslhkfspgffpgtgdvsdvglgkgryysvnvpiqdgiqdekyyqicesvlkevyq
afnpkavvlqlgadtiagdpmcsfnmtpvgigkclkyilqwqlatlilggggynlantar
cwtyltgvilgktlsseipdhefftaygpdyvleitpscrpdrnephriqqilnyikgnl
khvv

Sequence, based on observed residues (ATOM records): (download)

>d4rn0a1 c.42.1.2 (A:14-377) automated matches {Human (Homo sapiens) [TaxId: 9606]}
lvpvyiyspeyvsmcdslakipkradmvhslieayalhkqmrivkpkvasmeematfhtd
aylqhlqkvsqegsieyglgydcpategifdyaaaiggatitaaqclidgmckvainwsg
gwhhakkdeasgfcylndavlgilrlrrkferilyvdldlhhgdgvedafsftskvmtvs
lhkfspgffpgtgdvsdvglgkgryysvnvpiqdgiqdekyyqicesvlkevyqafnpka
vvlqlgadtiagdpmcsfnmtpvgigkclkyilqwqlatlilggggynlantarcwtylt
gvilgktlsseipdhefftaygpdyvleitpscrpdrnephriqqilnyikgnlkhvv

SCOPe Domain Coordinates for d4rn0a1:

Click to download the PDB-style file with coordinates for d4rn0a1.
(The format of our PDB-style files is described here.)

Timeline for d4rn0a1:

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Domains from same chain:
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d4rn0a2