Lineage for d4wdzc_ (4wdz C:)

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2075417Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. 2076457Superfamily b.121.6: Group I dsDNA viruses [88648] (2 families) (S)
  5. 2076458Family b.121.6.1: Papovaviridae-like VP [88649] (3 protein domains)
  6. 2076528Protein automated matches [191200] (7 species)
    not a true protein
  7. 2076637Species Jc polyomavirus [TaxId:10632] [270722] (7 PDB entries)
  8. 2076650Domain d4wdzc_: 4wdz C: [270723]
    automated match to d4mbzj_
    complexed with edo, gol; mutant

Details for d4wdzc_

PDB Entry: 4wdz (more details), 1.8 Å

PDB Description: jc polyomavirus vp1 five-fold pore mutant n221w
PDB Compounds: (C:) Major capsid protein VP1

SCOPe Domain Sequences for d4wdzc_:

Sequence, based on SEQRES records: (download)

>d4wdzc_ b.121.6.1 (C:) automated matches {Jc polyomavirus [TaxId: 10632]}
evlevktgvdsitevecfltpemgdpdehlrgfsksisisdtfesdspnrdmlpcysvar
iplpnlnedltcgnilmweavtlktevigvtslmnvhsngqathdngagkpvqgtsfhff
svggealelqgvlfnyrtkypdgtifpknatvqsqvmntehkayldknkaypvecwvpdp
trnentryfgtltggewvppvlhitntattvlldefgvgplckgdnlylsavdvcgmftn
rsgsqqwrglsryfkvqlrkrrvk

Sequence, based on observed residues (ATOM records): (download)

>d4wdzc_ b.121.6.1 (C:) automated matches {Jc polyomavirus [TaxId: 10632]}
evlevktgvdsitevecfltpemgdpdehlrgfsksisisdtfesdspnrdmlpcysvar
iplpnlnilmweavtlktevigvtslmnvhsngqathdngagkpvqgtsfhffsvggeal
elqgvlfnyrtkypdgtifpknatvqsqvmntehkayldknkaypvecwvpdptrnentr
yfgtltggewvppvlhitntattvlldefgvgplckgdnlylsavdvcgmftnrsgsqqw
rglsryfkvqlrkrrvk

SCOPe Domain Coordinates for d4wdzc_:

Click to download the PDB-style file with coordinates for d4wdzc_.
(The format of our PDB-style files is described here.)

Timeline for d4wdzc_: