Lineage for Species: Vibrio cholerae [TaxId: 243277]

  1. Root: SCOPe 2.08
  2. 2923792Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
  3. 2971984Fold d.115: YrdC/RibB [55820] (1 superfamily)
    core: alpha-beta(2)-alpha-beta-alpha(2)-beta(2)-alpha-beta-alpha-beta; 3 layers; mixed twisted sheet of 7 strands; order 7126354; strands 7 and 1 are parallel to each other
  4. 2971985Superfamily d.115.1: YrdC/RibB [55821] (3 families) (S)
  5. 2972000Family d.115.1.2: 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB [64372] (2 proteins)
    contains one additional helix in the C-terminal extension
    automatically mapped to Pfam PF00926
  6. 2972027Protein automated matches [190415] (4 species)
    not a true protein
  7. 2972037Species Vibrio cholerae [TaxId:243277] [270331] (6 PDB entries)

PDB entries in Species: Vibrio cholerae [TaxId: 243277]:

  1. Domain(s) for 4p6c:
    1. 2972042Domain d4p6ca_: 4p6c A: [270335]
      automated match to d1ieza_
      complexed with res
    2. 2972043Domain d4p6cb_: 4p6c B: [270337]
      automated match to d1ieza_
      complexed with res
  2. Domain(s) for 4p6d:
    1. 2972038Domain d4p6da_: 4p6d A: [270336]
      automated match to d1ieza_
      complexed with edo, po4
    2. 2972039Domain d4p6db_: 4p6d B: [270334]
      automated match to d1ieza_
      complexed with edo, po4
  3. Domain(s) for 4p6p:
    1. 2972040Domain d4p6pa_: 4p6p A: [270332]
      Other proteins in same PDB: d4p6pb2
      automated match to d1ieza_
      complexed with res, zn
    2. 2972041Domain d4p6pb1: 4p6p B:1-216 [270333]
      Other proteins in same PDB: d4p6pb2
      automated match to d1ieza_
      complexed with res, zn
  4. Domain(s) for 4p77:
    1. 2972048Domain d4p77a_: 4p77 A: [270338]
      automated match to d1ieza_
      complexed with 5rp, gol
    2. 2972049Domain d4p77b_: 4p77 B: [270339]
      automated match to d1ieza_
      complexed with 5rp, gol
  5. Domain(s) for 4p8e:
    1. 2972046Domain d4p8ea_: 4p8e A: [270343]
      Other proteins in same PDB: d4p8eb2
      automated match to d1ieza_
      complexed with 5rp, edo, zn
    2. 2972047Domain d4p8eb1: 4p8e B:1-215 [270342]
      Other proteins in same PDB: d4p8eb2
      automated match to d1ieza_
      complexed with 5rp, edo, zn
  6. Domain(s) for 4p8j:
    1. 2972044Domain d4p8ja_: 4p8j A: [270341]
      automated match to d1ieza_
      complexed with gol
    2. 2972045Domain d4p8jb_: 4p8j B: [270340]
      automated match to d1ieza_
      complexed with gol

More info for Species Vibrio cholerae [TaxId:243277] from d.115.1.2 automated matches

Timeline for Species Vibrio cholerae [TaxId:243277] from d.115.1.2 automated matches: