SCOPe 2.06: Domain d4yfsa_: 4yfs A:

Lineage for d4yfsa_ (4yfs A:)

1. Root: SCOPe 2.06

2. Class a: All alpha proteins [46456] (289 folds)

3. Fold a.264: Duffy binding domain-like [140923] (1 superfamily)
   consist of two subdomains, each containing a three-helical bundle

4. Superfamily a.264.1: Duffy binding domain-like [140924] (2 families)
   automatically mapped to Pfam PF05424

5. Family a.264.1.1: Duffy binding domain [140925] (3 proteins)
   Pfam PF05424

6. Protein automated matches [191262] (2 species)
   not a true protein

7. Species Plasmodium vivax [TaxId:126793] [189825] (4 PDB entries)

8. Domain d4yfsa_: 4yfs A: [270186]
   automated match to d4nuub_

Details for d4yfsa_

PDB Entry: 4yfs, 2.1 Å

PDB Description: structure of the synthetic duffy binding protein (dbp) antigen deknull relevant for malaria vaccine design

PDB Compounds: (A:) Duffy receptor

SCOPe Domain Sequences for d4yfsa_:

Sequence, based on SEQRES records:

>d4yfsa_ a.264.1.1 (A:) automated matches {Plasmodium vivax [TaxId: 126793]}
kncnykrkrrerdwdcntkkdvcipdrryqlcmkeltnlvnntdtnfhrditfrklylkr
kliydaavegdlllklnnyrynkdfckdirwslgdfgdiimgtdmegigyskvvennlrs
ifgtastaatsrtswwneskaqiwtammysvkkrlkgnfiwicklnvavniepqiyrwir
ewgrdyvselptevqklkekcdgkinytdkkvckvppcqnacksydqwitrkknqwdvls
nkfisvknaekvqtagivtpydilkqeldefnevafeneinkrdgayielcvcs

Sequence, based on observed residues (ATOM records):

>d4yfsa_ a.264.1.1 (A:) automated matches {Plasmodium vivax [TaxId: 126793]}
kncnykrkrrerdwdcntkkdvcipdrryqlcmkeltnlhrditfrklylkrkliydaav
egdlllklnnyrynkdfckdirwslgdfgdiimgtdmegigyskvvennlrsifgtasta
atsrtswwneskaqiwtammysvkkrlkgnfiwicklnvavniepqiyrwirewgrdyvs
elptevqklkekcdgkinytdkkvckvppcqnacksydqwitrkknqwdvlsnkfisvkn
aekvqtaivtpydilkqeldefnevafeneinkrdgayielcvcs

Timeline for d4yfsa_:

• d4yfsa_ first appeared in SCOPe 2.05
  
• d4yfsa_ appears in SCOPe 2.07
  
• d4yfsa_ appears in the current release, SCOPe 2.08