SCOPe 2.08: Domain d4rdya_: 4rdy A:

Lineage for d4rdya_ (4rdy A:)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.9: Metallo-dependent hydrolases [51556] (19 families)
   the beta-sheet barrel is similarly distorted and capped by a C-terminal helix
   has transition metal ions bound inside the barrel

5. Family c.1.9.0: automated matches [191327] (1 protein)
   not a true family

6. Protein automated matches [190150] (36 species)
   not a true protein

7. Species Vulcanisaeta moutnovskia [TaxId:985053] [269342] (3 PDB entries)

8. Domain d4rdya_: 4rdy A: [269346]
   automated match to d4g2da_
   complexed with 3m5, co, gol, so4

Details for d4rdya_

PDB Entry: 4rdy, 2 Å

PDB Description: Crystal structure of VmoLac bound to 3-oxo-C10 AHL

PDB Compounds: (A:) Parathion hydrolase

SCOPe Domain Sequences for d4rdya_:

Sequence; same for both SEQRES and ATOM records:

>d4rdya_ c.1.9.0 (A:) automated matches {Vulcanisaeta moutnovskia [TaxId: 985053]}
vrisiaggneidpgsmgltlfhehlrlitevvrwnwphlynedeelkraidavnaakkyg
vktiidltvagigcdvrfnekvakatgvniimgtgfytyteipfyfknrgidslvdafvh
ditigiqgtntraafvkavidssgltkdvemairaaakahiktdvpiithsfvgnkssld
lirifkeegvdlartvighvgdtddisfieqilregafigldrfgldiylpldkrvktai
elikrgwidqlllshdycptidwyppevvrstvpdwtmtlifekviprmrsegiteeqin
rvlidnprrlftg

Timeline for d4rdya_:

• d4rdya_ first appeared in SCOPe 2.05
  
• d4rdya_ appears in SCOPe 2.07