Lineage for d4ngua1 (4ngu A:30-345)

  1. Root: SCOPe 2.07
  2. 2413226Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2485906Fold c.94: Periplasmic binding protein-like II [53849] (1 superfamily)
    consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
    mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest
  4. 2485907Superfamily c.94.1: Periplasmic binding protein-like II [53850] (4 families) (S)
    Similar in architecture to the superfamily I but partly differs in topology
  5. 2487255Family c.94.1.0: automated matches [191309] (1 protein)
    not a true family
  6. 2487256Protein automated matches [190039] (146 species)
    not a true protein
  7. 2487558Species Desulfovibrio alaskensis [TaxId:207559] [267973] (2 PDB entries)
  8. 2487563Domain d4ngua1: 4ngu A:30-345 [269252]
    Other proteins in same PDB: d4ngua2
    automated match to d4n8gb_
    complexed with cl, dal, so4

Details for d4ngua1

PDB Entry: 4ngu (more details), 2.5 Å

PDB Description: Crystal structure of a TRAP periplasmic solute binding protein from Desulfovibrio alaskensis G20 (Dde_1548), Target EFI-510103, with bound D-Ala-D-Ala
PDB Compounds: (A:) TRAP dicarboxylate transporter, DctP subunit

SCOPe Domain Sequences for d4ngua1:

Sequence; same for both SEQRES and ATOM records: (download)

>d4ngua1 c.94.1.0 (A:30-345) automated matches {Desulfovibrio alaskensis [TaxId: 207559]}

SCOPe Domain Coordinates for d4ngua1:

Click to download the PDB-style file with coordinates for d4ngua1.
(The format of our PDB-style files is described here.)

Timeline for d4ngua1:

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