Lineage for d4wy0d_ (4wy0 D:)

  1. Root: SCOPe 2.08
  2. 2826024Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2826025Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2826663Superfamily c.1.2: Ribulose-phoshate binding barrel [51366] (7 families) (S)
  5. 2827466Family c.1.2.0: automated matches [191350] (1 protein)
    not a true family
  6. 2827467Protein automated matches [190292] (36 species)
    not a true protein
  7. 2827538Species Geobacillus kaustophilus [TaxId:235909] [269096] (3 PDB entries)
  8. 2827542Domain d4wy0d_: 4wy0 D: [269122]
    automated match to d3fema_
    complexed with cac, edo, po4, r5p

Details for d4wy0d_

PDB Entry: 4wy0 (more details), 2.3 Å

PDB Description: pdxs (g. stearothermophilus) co-crystallized with r5p in the presence of ammonia.
PDB Compounds: (D:) Pyridoxal biosynthesis lyase pdxS

SCOPe Domain Sequences for d4wy0d_:

Sequence, based on SEQRES records: (download)

>d4wy0d_ c.1.2.0 (D:) automated matches {Geobacillus kaustophilus [TaxId: 235909]}
emqkggvimdvvnaeqakiaeaagavavmalervpadiraaggvarmadptvieevmnav
sipvmakvrighyvearvlealgvdyidesevltpadeefhidkrqftvpfvcgcrdlge
aarriaegasmlrtkgepgtgniveavrhmrkvnaqirkvvnmsedelvaeakqlgapve
vlreikrlgrlpvvnfaaggvttpadaalmmhlgadgvfvgsgifksenpekyaraivea
tthyedyeliahlskg

Sequence, based on observed residues (ATOM records): (download)

>d4wy0d_ c.1.2.0 (D:) automated matches {Geobacillus kaustophilus [TaxId: 235909]}
emqkggvimdvvnaeqakiaeaagavavmalergvarmadptvieevmnavsipvmakvr
ighyvearvlealgvdyidesevltpadeefhidkrqftvpfvcgcrdlgeaarriaega
smlrtkgepgtgniveavrhmrkvnaqirkvvnmsedelvaeakqlgapvevlreikrlg
rlpvvnfaaggvttpadaalmmhlgadgvfvgsgifksenpekyaraiveatthyedyel
iahlskg

SCOPe Domain Coordinates for d4wy0d_:

Click to download the PDB-style file with coordinates for d4wy0d_.
(The format of our PDB-style files is described here.)

Timeline for d4wy0d_: