Lineage for d4rgka1 (4rgk A:2-415)

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2070014Fold b.82: Double-stranded beta-helix [51181] (7 superfamilies)
    one turn of helix is made by two pairs of antiparallel strands linked with short turns
    has appearance of a sandwich of distinct architecture and jelly-roll topology
  4. 2070786Superfamily b.82.2: Clavaminate synthase-like [51197] (16 families) (S)
    Iron and ketoglutarate-dependent enzymes; elaborated version of this common fold
  5. 2071232Family b.82.2.0: automated matches [191672] (1 protein)
    not a true family
  6. 2071233Protein automated matches [191281] (12 species)
    not a true protein
  7. 2071304Species Yersinia pestis [TaxId:632] [268729] (1 PDB entry)
  8. 2071305Domain d4rgka1: 4rgk A:2-415 [268730]
    Other proteins in same PDB: d4rgka2
    automated match to d2dbia_
    complexed with edo, gol, so4

Details for d4rgka1

PDB Entry: 4rgk (more details), 2.15 Å

PDB Description: Crystal Structure of Putative Phytanoyl-CoA Dioxygenase Family Protein YbiU from Yersinia pestis
PDB Compounds: (A:) Uncharacterized protein

SCOPe Domain Sequences for d4rgka1:

Sequence; same for both SEQRES and ATOM records: (download)

>d4rgka1 b.82.2.0 (A:2-415) automated matches {Yersinia pestis [TaxId: 632]}

SCOPe Domain Coordinates for d4rgka1:

Click to download the PDB-style file with coordinates for d4rgka1.
(The format of our PDB-style files is described here.)

Timeline for d4rgka1:

  • d4rgka1 first appeared in SCOPe 2.05, called d4rgka_

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