SCOP 1.55: Domain d1avf.1: 1avf P:,A:

Lineage for d1avf.1 (1avf P:,A:)

1. Root: SCOP 1.55

2. Class b: All beta proteins [48724] (93 folds)

3. Fold b.50: Acid proteases [50629] (1 superfamily)

4. Superfamily b.50.1: Acid proteases [50630] (2 families)

5. Family b.50.1.2: Pepsin-like [50646] (9 proteins)

6. Protein Pepsin(ogen) [50658] (4 species)

7. Species Human (Homo sapiens), progastricsin (pepsinogen C) [TaxId:9606] [50661] (2 PDB entries)

8. Domain d1avf.1: 1avf P:,A: [26853]

Details for d1avf.1

PDB Entry: 1avf, 2.36 Å

PDB Description: activation intermediate 2 of human gastricsin from human stomach

SCOP Domain Sequences for d1avf.1:

Sequence, based on SEQRES records:

>g1avf.1 b.50.1.2 (P:,A:) Pepsin(ogen) {Human (Homo sapiens), progastricsin (pepsinogen C)}
avvkvplkkfksiretmkekgXvtyepmaymdaayfgeisigtppqnflvlfdtgssnlw
vpsvycqsqactshsrfnpsesstystngqtfslqygsgsltgffgydtltvqsiqvpnq
efglsenepgtnfvyaqfdgimglaypalsvdeattamqgmvqegaltspvfsvylsnqq
gssggavvfggvdsslytgqiywapvtqelywqigieefliggqasgwcsegcqaivdtg
tslltvpqqymsallqatgaqedeygqflvncnsiqnlpsltfiingvefplppssyils
nngyctvgveptylssqngqplwilgdvflrsyysvydlgnnrvgfataa

Sequence, based on observed residues (ATOM records):

>g1avf.1 b.50.1.2 (P:,A:) Pepsin(ogen) {Human (Homo sapiens), progastricsin (pepsinogen C)}
avvkvplkkfksiretmkekgXvtyepmaymdaayfgeisigtppqnflvlfdtgssnlw
vpsvycqsqactshsrfnpsesstystngqtfslqysgsltgffgydtltvqsiqvpnqe
fglsenepgtnfvyaqfdgimglaypalsvdeattamqgmvqegaltspvfsvylsngga
vvfggvdsslytgqiywapvtqelywqigieefliggqasgwcsegcqaivdtgtslltv
pqqymsallqatgaqedeygqflvncnsiqnlpsltfiingvefplppssyilsnngyct
vgveptylssqngqplwilgdvflrsyysvydlgnnrvgfataa

Timeline for d1avf.1:

• d1avf.1 appears in SCOP 1.57
  
• d1avf.1 appears in the current release, SCOPe 2.08