SCOPe 2.04: Domain d1qdmc2: 1qdm C:3-247,C:248-338

Lineage for d1qdmc2 (1qdm C:3-247,C:248-338)

1. Root: SCOPe 2.04

2. Class b: All beta proteins [48724] (176 folds)

3. Fold b.50: Acid proteases [50629] (1 superfamily)
   barrel, closed; n=6, S=10, complex topology

4. Superfamily b.50.1: Acid proteases [50630] (4 families)

5. Family b.50.1.2: Pepsin-like [50646] (11 proteins)
   duplication: consists of two similar barrel domains
   N-terminal: barrel, partly opened; n*=6, S*=10

6. Protein Plant acid proteinase, phytepsin [50655] (2 species)

7. Species Barley (Hordeum vulgare) [TaxId:4513] [50657] (1 PDB entry)

8. Domain d1qdmc2: 1qdm C:3-247,C:248-338 [26840]
   Other proteins in same PDB: d1qdma1, d1qdmb1, d1qdmc1
   zymogen; contains propeptide at the N-terminus and swaposin domain (residues 1S-104S) inserted in between residues 247 and 248

Details for d1qdmc2

PDB Entry: 1qdm, 2.3 Å

PDB Description: crystal structure of prophytepsin, a zymogen of a barley vacuolar aspartic proteinase.

PDB Compounds: (C:) prophytepsin

SCOPe Domain Sequences for d1qdmc2:

Sequence, based on SEQRES records:

>d1qdmc2 b.50.1.2 (C:3-247,C:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]}
eegdivalknymnaqyfgeigvgtppqkftvifdtgssnlwvpsakcyfsiacylhsryk
agasstykkngkpaaiqygtgsiagyfsedsvtvgdlvvkdqefieatkepgitflvakf
dgilglgfkeisvgkavpvwykmieqglvsdpvfsfwlnrhvdegeggeiifggmdpkhy
vgehtyvpvtqkgywqfdmgdvlvggkstgfcaggcaaiadsgtsllagptaiiteinek
igaagXspmgesavdcgslgsmpdieftiggkkfalkpeeyilkvgegaaaqcisgftam
dippprgplwilgdvfmgpyhtvfdygklrigfakaa

Sequence, based on observed residues (ATOM records):

>d1qdmc2 b.50.1.2 (C:3-247,C:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]}
eegdivalknymnaqyfgeigvgtppqkftvifdtgssnlwvpsakcyfsiacylhsryk
agasstykkngkpaaiqygtgsiagyfsedsvtvgdlvvkdqefieatkepgitflvakf
dgilglgfkeisvgkavpvwykmieqglvsdpvfsfwlnrhvggeiifggmdpkhyvgeh
tyvpvtqkgywqfdmgdvlvggkstgfcaggcaaiadsgtsllagptaiiteinekigaa
gXspmgesavdcgslgsmpdieftiggkkfalkpeeyilkvgegaaqcisgftamdippp
rgplwilgdvfmgpyhtvfdygklrigfakaa

Timeline for d1qdmc2:

• d1qdmc2 first appeared (with stable ids) in SCOP 1.55
  
• d1qdmc2 appears in SCOPe 2.03
  
• d1qdmc2 appears in SCOPe 2.05
  
• d1qdmc2 appears in the current release, SCOPe 2.08