SCOPe 2.05: Domain d1qdma2: 1qdm A:2-247,A:248-338

Lineage for d1qdma2 (1qdm A:2-247,A:248-338)

1. Root: SCOPe 2.05

2. Class b: All beta proteins [48724] (176 folds)

3. Fold b.50: Acid proteases [50629] (1 superfamily)
   barrel, closed; n=6, S=10, complex topology

4. Superfamily b.50.1: Acid proteases [50630] (4 families)

5. Family b.50.1.2: Pepsin-like [50646] (11 proteins)
   duplication: consists of two similar barrel domains
   N-terminal: barrel, partly opened; n*=6, S*=10

6. Protein Plant acid proteinase, phytepsin [50655] (2 species)

7. Species Barley (Hordeum vulgare) [TaxId:4513] [50657] (1 PDB entry)

8. Domain d1qdma2: 1qdm A:2-247,A:248-338 [26838]
   Other proteins in same PDB: d1qdma1, d1qdmb1, d1qdmc1
   zymogen; contains propeptide at the N-terminus and swaposin domain (residues 1S-104S) inserted in between residues 247 and 248

Details for d1qdma2

PDB Entry: 1qdm, 2.3 Å

PDB Description: crystal structure of prophytepsin, a zymogen of a barley vacuolar aspartic proteinase.

PDB Compounds: (A:) prophytepsin

SCOPe Domain Sequences for d1qdma2:

Sequence, based on SEQRES records:

>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]}
eeegdivalknymnaqyfgeigvgtppqkftvifdtgssnlwvpsakcyfsiacylhsry
kagasstykkngkpaaiqygtgsiagyfsedsvtvgdlvvkdqefieatkepgitflvak
fdgilglgfkeisvgkavpvwykmieqglvsdpvfsfwlnrhvdegeggeiifggmdpkh
yvgehtyvpvtqkgywqfdmgdvlvggkstgfcaggcaaiadsgtsllagptaiiteine
kigaagXspmgesavdcgslgsmpdieftiggkkfalkpeeyilkvgegaaaqcisgfta
mdippprgplwilgdvfmgpyhtvfdygklrigfakaa

Sequence, based on observed residues (ATOM records):

>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]}
eeegdivalknymnaqyfgeigvgtppqkftvifdtgssnlwvpsakcyfsiacylhsry
kagasstykkngkpaaiqygtgsiagyfsedsvtvgdlvvkdqefieatkepgitflvak
fdgilglgfkeisvgkavpvwykmieqglvsdpvfsfwlnrhvggeiifggmdpkhyvge
htyvpvtqkgywqfdmgdvlvggkstgfcaggcaaiadsgtsllagptaiiteinekiga
agXspmgesavdcgslgsmpdieftiggkkfalkpeeyilkvgegaaaqcisgftamdip
pprgplwilgdvfmgpyhtvfdygklrigfakaa

Timeline for d1qdma2:

• d1qdma2 first appeared (with stable ids) in SCOP 1.55
  
• d1qdma2 appears in SCOPe 2.04
  
• d1qdma2 appears in SCOPe 2.06
  
• d1qdma2 appears in the current release, SCOPe 2.08