Lineage for Species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

  1. Root: SCOPe 2.07
  2. 2494617Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
  3. 2508201Fold d.21: Diaminopimelate epimerase-like [54505] (1 superfamily)
    mixed beta-sheet folds into a barrel (n=8, S=14) around the central helix
  4. 2508202Superfamily d.21.1: Diaminopimelate epimerase-like [54506] (5 families) (S)
    duplication: consists of two similar domain swapped with C-terminal strands
  5. 2508203Family d.21.1.1: Diaminopimelate epimerase [54507] (1 protein)
    automatically mapped to Pfam PF01678
  6. 2508204Protein Diaminopimelate epimerase [54508] (3 species)
  7. 2508227Species Thale cress (Arabidopsis thaliana) [TaxId:3702] [267831] (2 PDB entries)

PDB entries in Species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]:

  1. Domain(s) for 3ejx:
    1. 2508228Domain d3ejxa1: 3ejx A:25-158 [264749]
      Other proteins in same PDB: d3ejxb3
      automated match to d4ijza1
      complexed with zdp
    2. 2508229Domain d3ejxa2: 3ejx A:159-311 [264750]
      Other proteins in same PDB: d3ejxb3
      automated match to d4ijza2
      complexed with zdp
    3. 2508230Domain d3ejxb1: 3ejx B:25-158 [264751]
      Other proteins in same PDB: d3ejxb3
      automated match to d4ijza1
      complexed with zdp
    4. 2508231Domain d3ejxb2: 3ejx B:159-311 [264752]
      Other proteins in same PDB: d3ejxb3
      automated match to d4ijza2
      complexed with zdp
    5. 2508232Domain d3ejxc1: 3ejx C:25-158 [264753]
      Other proteins in same PDB: d3ejxb3
      automated match to d4ijza1
      complexed with zdp
    6. 2508233Domain d3ejxc2: 3ejx C:159-311 [264754]
      Other proteins in same PDB: d3ejxb3
      automated match to d4ijza2
      complexed with zdp
    7. 2508234Domain d3ejxd1: 3ejx D:11-158 [291873]
      Other proteins in same PDB: d3ejxb3
      automated match to d3ejxa1
      complexed with zdp
    8. 2508235Domain d3ejxd2: 3ejx D:159-311 [291874]
      Other proteins in same PDB: d3ejxb3
      automated match to d3ejxa2
      complexed with zdp
    9. 2508236Domain d3ejxe1: 3ejx E:25-158 [264755]
      Other proteins in same PDB: d3ejxb3
      automated match to d4ijza1
      complexed with zdp
    10. 2508237Domain d3ejxe2: 3ejx E:159-311 [264756]
      Other proteins in same PDB: d3ejxb3
      automated match to d4ijza2
      complexed with zdp
    11. 2508238Domain d3ejxf1: 3ejx F:11-158 [291875]
      Other proteins in same PDB: d3ejxb3
      automated match to d3ejxa1
      complexed with zdp
    12. 2508239Domain d3ejxf2: 3ejx F:159-311 [291876]
      Other proteins in same PDB: d3ejxb3
      automated match to d3ejxa2
      complexed with zdp
  2. Domain(s) for 3ekm:
    1. 2508240Domain d3ekma1: 3ekm A:25-158 [264757]
      automated match to d4ijza1
      complexed with zdr
    2. 2508241Domain d3ekma2: 3ekm A:159-311 [264758]
      automated match to d4ijza2
      complexed with zdr
    3. 2508242Domain d3ekmb1: 3ekm B:25-158 [264759]
      automated match to d4ijza1
      complexed with zdr
    4. 2508243Domain d3ekmb2: 3ekm B:159-311 [264760]
      automated match to d4ijza2
      complexed with zdr
    5. 2508244Domain d3ekmc1: 3ekm C:25-158 [264761]
      automated match to d4ijza1
      complexed with zdr
    6. 2508245Domain d3ekmc2: 3ekm C:159-311 [264762]
      automated match to d4ijza2
      complexed with zdr
    7. 2508246Domain d3ekmd1: 3ekm D:11-158 [291881]
      automated match to d3ejxa1
      complexed with zdr
    8. 2508247Domain d3ekmd2: 3ekm D:159-311 [291882]
      automated match to d3ejxa2
      complexed with zdr
    9. 2508248Domain d3ekme1: 3ekm E:25-158 [264763]
      automated match to d4ijza1
      complexed with zdr
    10. 2508249Domain d3ekme2: 3ekm E:159-311 [264764]
      automated match to d4ijza2
      complexed with zdr
    11. 2508250Domain d3ekmf1: 3ekm F:11-158 [291883]
      automated match to d3ejxa1
      complexed with zdr
    12. 2508251Domain d3ekmf2: 3ekm F:159-311 [291884]
      automated match to d3ejxa2
      complexed with zdr

More info for Species Thale cress (Arabidopsis thaliana) [TaxId:3702] from d.21.1.1 Diaminopimelate epimerase

Timeline for Species Thale cress (Arabidopsis thaliana) [TaxId:3702] from d.21.1.1 Diaminopimelate epimerase: