Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. 3021034Class f: Membrane and cell surface proteins and peptides [56835] (69 folds)
  3. 3021955Fold f.4: Transmembrane beta-barrels [56924] (7 superfamilies)
    not a true fold, gathers together transmembrane barrels of different (n,S)
    annotated by the SCOP(e) curators as 'not a true fold'
  4. 3022096Superfamily f.4.3: Porins [56935] (5 families) (S)
  5. 3022367Family f.4.3.0: automated matches [267625] (1 protein)
    not a true family
  6. 3022368Protein automated matches [267676] (11 species)
    not a true protein

Species:

  1. 3022369Acinetobacter baumannii [TaxId:470] [317226] (4 PDB entries)
    1. Domain for 5fp1:
    2. Domains for 5fr8:
      1. 3022377Domain d5fr8a_: 5fr8 A: [317229]
        automated match to d1fepa_
        complexed with c8e
      2. 3022378Domain d5fr8b_: 5fr8 B: [317227]
        automated match to d1fepa_
        complexed with c8e
    3. Domains for 6h7f:
      1. 3022374Domain d6h7fa_: 6h7f A: [358641]
        automated match to d5fp1a_
        complexed with c8e, edo, fe, fv8, opv, opz
      2. 3022375Domain d6h7fb_: 6h7f B: [358607]
        automated match to d5fp1a_
        complexed with c8e, edo, fe, fv8, opv, opz
      3. 3022376Domain d6h7fc_: 6h7f C: [358517]
        automated match to d5fp1a_
        complexed with c8e, edo, fe, fv8, opv, opz
    4. Domains for 6hcp:
      1. 3022370Domain d6hcpa_: 6hcp A: [358524]
        automated match to d5fp1a_
        complexed with c8e, edo, po4
      2. 3022371Domain d6hcpb_: 6hcp B: [358608]
        automated match to d5fp1a_
        complexed with c8e, edo, po4
      3. 3022372Domain d6hcpc_: 6hcp C: [358538]
        automated match to d5fp1a_
        complexed with c8e, edo, po4
  2. 3022379Acinetobacter baumannii [TaxId:575584] [358518] (1 PDB entry)
  3. 3022383Bordetella pertussis [TaxId:520] [267830] (1 PDB entry)
  4. 3022385Escherichia coli [TaxId:679895] [367384] (1 PDB entry)
  5. 3022387Klebsiella aerogenes [TaxId:548] [353953] (1 PDB entry)
  6. 3022392Providencia stuartii [TaxId:588] [311523] (4 PDB entries)
    1. Domains for 4d65:
      1. 3022393Domain d4d65a_: 4d65 A: [311722]
        automated match to d2j1na_
        complexed with ftt, lda, myr, so4
      2. 3022394Domain d4d65b_: 4d65 B: [311574]
        automated match to d2j1na_
        complexed with ftt, lda, myr, so4
      3. 3022395Domain d4d65c_: 4d65 C: [311534]
        automated match to d2j1na_
        complexed with ftt, lda, myr, so4
      4. 3022396Domain d4d65d_: 4d65 D: [311555]
        automated match to d2j1na_
        complexed with ftt, lda, myr, so4
      5. 3022397Domain d4d65e_: 4d65 E: [311524]
        automated match to d2j1na_
        complexed with ftt, lda, myr, so4
      6. 3022398Domain d4d65f_: 4d65 F: [311645]
        automated match to d2j1na_
        complexed with ftt, lda, myr, so4
    2. Domains for 5nxn:
      1. 3022405Domain d5nxna_: 5nxn A: [347007]
        automated match to d4d65a_
        complexed with ca; mutant
      2. 3022406Domain d5nxnb_: 5nxn B: [347002]
        automated match to d4d65a_
        complexed with ca; mutant
      3. 3022407Domain d5nxnc_: 5nxn C: [347013]
        automated match to d4d65a_
        complexed with ca; mutant
    3. Domains for 5nxr:
      1. 3022402Domain d5nxra_: 5nxr A: [346981]
        automated match to d4d65a_
        complexed with ca, cl, lda
      2. 3022403Domain d5nxrb_: 5nxr B: [346967]
        automated match to d4d65a_
        complexed with ca, cl, lda
      3. 3022404Domain d5nxrc_: 5nxr C: [346961]
        automated match to d4d65a_
        complexed with ca, cl, lda
    4. Domains for 5nxu:
      1. 3022399Domain d5nxua_: 5nxu A: [347040]
        automated match to d4d65a_
        complexed with ca, lda
      2. 3022400Domain d5nxub_: 5nxu B: [347025]
        automated match to d4d65a_
        complexed with ca, lda
      3. 3022401Domain d5nxuc_: 5nxu C: [347118]
        automated match to d4d65a_
        complexed with ca, lda
  7. 3022408Pseudomonas aeruginosa [TaxId:208964] [317230] (2 PDB entries)
    1. Domains for 5fok:
      1. 3022409Domain d5foka1: 5fok A:27-718 [317231]
        Other proteins in same PDB: d5foka2, d5fokb2
        automated match to d2fcpa_
        complexed with c8e, na, so4
      2. 3022410Domain d5fokb1: 5fok B:27-718 [317314]
        Other proteins in same PDB: d5foka2, d5fokb2
        automated match to d2fcpa_
        complexed with c8e, na, so4
    2. Domain for 6z8a:
  8. 3022412Pseudomonas aeruginosa [TaxId:287] [311191] (3 PDB entries)
    1. Domain for 1xkw:
    2. Domain for 6i96:
    3. Domain for 6i98:
  9. 3022416Pseudomonas aeruginosa [TaxId:798130] [346824] (1 PDB entry)
  10. 3022419Vibrio cholerae [TaxId:345073] [351425] (2 PDB entries)
    1. Domains for 6ehb:
      1. 3022420Domain d6ehba_: 6ehb A: [351442]
        automated match to d4d65a_
        complexed with c8e
      2. 3022421Domain d6ehbb_: 6ehb B: [351428]
        automated match to d4d65a_
        complexed with c8e
      3. 3022422Domain d6ehbc_: 6ehb C: [351426]
        automated match to d4d65a_
        complexed with c8e
    2. Domains for 6ehc:
      1. 3022423Domain d6ehca_: 6ehc A: [415827]
        automated match to d6enea_
        complexed with c8e; mutant
      2. 3022424Domain d6ehcb_: 6ehc B: [415828]
        automated match to d6enea_
        complexed with c8e; mutant
  11. 3022425Vibrio cholerae [TaxId:666] [347328] (1 PDB entry)

More info for Protein automated matches from f.4.3.0: automated matches

Timeline for Protein automated matches from f.4.3.0: automated matches: