SCOPe 2.08: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.08
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
Fold c.97: Cytidine deaminase-like [53926] (2 superfamilies)
core: alpha-beta(2)-(alpha-beta)2; 3 layers (a/b/a); mixed beta-sheet of 4 strands, order 2134; strand 1 is antiparallel to the rest
Superfamily c.97.3: JAB1/MPN domain [102712] (2 families)
Family c.97.3.0: automated matches [267623] (1 protein)
not a true family
Protein automated matches [267670] (4 species)
not a true protein

Species:

Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [267922] (2 PDB entries)
1. Domain for 3zef:
  - Domain d3zefb4: 3zef B:2150-2387 [345048]
    Other proteins in same PDB: d3zefa1, d3zefa2, d3zefb1, d3zefb2, d3zefb3, d3zefb5, d3zefd1, d3zefd2
    automated match to d4i43b1
    protein/RNA complex
2. Domain for 4bgd:
  - Domain d4bgdc_: 4bgd C: [265929]
    automated match to d2p87a_
    protein/RNA complex; complexed with adp, mg, pe5
Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [267950] (2 PDB entries)
1. Domain for 4ilg:
  - Domain d4ilgc_: 4ilg C: [262726]
    Other proteins in same PDB: d4ilga1, d4ilga2, d4ilgb1, d4ilgb2
    automated match to d2p87a_
    complexed with epe
2. Domain for 5dca:
  - Domain d5dcaj_: 5dca J: [279891]
    automated match to d2og4a_
Human (Homo sapiens) [TaxId:9606] [379331] (6 PDB entries)
1. Domain for 6s8q:
  - Domain d6s8qj1: 6s8q J:2064-2320 [379332]
    Other proteins in same PDB: d6s8qj2
    automated match to d5dcaj_
    protein/RNA complex; complexed with so4
2. Domain for 6s9i:
  - Domain d6s9ij1: 6s9i J:2064-2320 [379334]
    Other proteins in same PDB: d6s9ij2
    automated match to d5dcaj_
    protein/RNA complex
3. Domain for 7bdi:
  - Domain d7bdij1: 7bdi J:2064-2320 [404458]
    Other proteins in same PDB: d7bdij2
    automated match to d5dcaj_
    protein/RNA complex; complexed with ags, mg
4. Domain for 7bdj:
  - Domain d7bdjj1: 7bdj J:2064-2320 [404464]
    Other proteins in same PDB: d7bdjj2
    automated match to d5dcaj_
    protein/RNA complex; complexed with mg, tgb
5. Domain for 7bdk:
  - Domain d7bdkj1: 7bdk J:2064-2320 [404438]
    Other proteins in same PDB: d7bdkj2
    automated match to d5dcaj_
    protein/RNA complex; complexed with adp, mg
6. Domain for 7bdl:
  - Domain d7bdlj1: 7bdl J:2064-2320 [404440]
    Other proteins in same PDB: d7bdlj2
    automated match to d5dcaj_
    protein/RNA complex; complexed with mg, tg8
Saccharomyces cerevisiae [TaxId:285006] [267799] (1 PDB entry)
- Domain for 2og4:
  - Domain d2og4a_: 2og4 A: [264440]
    automated match to d2p87a_

More info for Protein automated matches from c.97.3.0: automated matches

Timeline for Protein automated matches from c.97.3.0: automated matches:

Protein automated matches from c.97.3.0: automated matches first appeared in SCOPe 2.05
Protein automated matches from c.97.3.0: automated matches appears in SCOPe 2.07