Lineage for d4rkqb1 (4rkq B:69-341)

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2143708Fold c.93: Periplasmic binding protein-like I [53821] (1 superfamily)
    consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
    parallel beta-sheet of 6 strands, order 213456
  4. 2143709Superfamily c.93.1: Periplasmic binding protein-like I [53822] (2 families) (S)
    Similar in architecture to the superfamily II but partly differs in topology
  5. 2143989Family c.93.1.0: automated matches [191439] (1 protein)
    not a true family
  6. 2143990Protein automated matches [190646] (70 species)
    not a true protein
  7. 2144039Species Arthrobacter sp. [TaxId:290399] [260960] (2 PDB entries)
  8. 2144041Domain d4rkqb1: 4rkq B:69-341 [267394]
    Other proteins in same PDB: d4rkqa2, d4rkqb2, d4rkqc2, d4rkqd2
    automated match to d4rkra_
    complexed with cl, edo, mg

Details for d4rkqb1

PDB Entry: 4rkq (more details), 1.9 Å

PDB Description: Crystal structure of LacI family transcriptional regulator from Arthrobacter sp. FB24, target EFI-560007
PDB Compounds: (B:) Transcriptional regulator, LacI family

SCOPe Domain Sequences for d4rkqb1:

Sequence, based on SEQRES records: (download)

>d4rkqb1 c.93.1.0 (B:69-341) automated matches {Arthrobacter sp. [TaxId: 290399]}
artsvglaipdltnpyfpafassvvelatlrgwhvvvddyghggrsgldavehlapqvda
vigylggyadqaqtvlgrrplivldenpggaagsinfdyqhaakvavaqlmdskrqhiay
leagsasesdepvpctvrgkavagrldelgaswslivaeetaeaareaaaaflrehpetd
gilafndlmaagvlkalsgsgrrvpedcavigmdgiplgellspqlstmaldlrevgraa
vellvgllsgavtpgsqssrttlkhrlvlrest

Sequence, based on observed residues (ATOM records): (download)

>d4rkqb1 c.93.1.0 (B:69-341) automated matches {Arthrobacter sp. [TaxId: 290399]}
artsvglaipdltnpyfpafassvvelatlrgwhvvvddyghggrsgldavehlapqvda
vigylggyadqaqtvlgrrplivldenpggaagsinfdyqhaakvavaqlmdskrqhiay
leagspvpctvrgkavagrldelgaswslivaeetaeaareaaaaflrehpetdgilafn
dlmaagvlkalsgsgrrvpedcavigmdgiplgellspqlstmaldlrevgraavellvg
llsgavtpgsqssrttlkhrlvlrest

SCOPe Domain Coordinates for d4rkqb1:

Click to download the PDB-style file with coordinates for d4rkqb1.
(The format of our PDB-style files is described here.)

Timeline for d4rkqb1:

  • d4rkqb1 first appeared in SCOPe 2.05, called d4rkqb_