SCOPe 2.08: Domain d4rkqb1: 4rkq B:69-341

Lineage for d4rkqb1 (4rkq B:69-341)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.93: Periplasmic binding protein-like I [53821] (1 superfamily)
   consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
   parallel beta-sheet of 6 strands, order 213456

4. Superfamily c.93.1: Periplasmic binding protein-like I [53822] (2 families)
   Similar in architecture to the superfamily II but partly differs in topology

5. Family c.93.1.0: automated matches [191439] (1 protein)
   not a true family

6. Protein automated matches [190646] (77 species)
   not a true protein

7. Species Arthrobacter sp. [TaxId:290399] [260960] (2 PDB entries)

8. Domain d4rkqb1: 4rkq B:69-341 [267394]
   Other proteins in same PDB: d4rkqa2, d4rkqb2, d4rkqc2, d4rkqd2
   automated match to d4rkra_
   complexed with cl, edo, mg

Details for d4rkqb1

PDB Entry: 4rkq, 1.9 Å

PDB Description: crystal structure of laci family transcriptional regulator from arthrobacter sp. fb24, target efi-560007

PDB Compounds: (B:) Transcriptional regulator, LacI family

SCOPe Domain Sequences for d4rkqb1:

Sequence, based on SEQRES records:

>d4rkqb1 c.93.1.0 (B:69-341) automated matches {Arthrobacter sp. [TaxId: 290399]}
artsvglaipdltnpyfpafassvvelatlrgwhvvvddyghggrsgldavehlapqvda
vigylggyadqaqtvlgrrplivldenpggaagsinfdyqhaakvavaqlmdskrqhiay
leagsasesdepvpctvrgkavagrldelgaswslivaeetaeaareaaaaflrehpetd
gilafndlmaagvlkalsgsgrrvpedcavigmdgiplgellspqlstmaldlrevgraa
vellvgllsgavtpgsqssrttlkhrlvlrest

Sequence, based on observed residues (ATOM records):

>d4rkqb1 c.93.1.0 (B:69-341) automated matches {Arthrobacter sp. [TaxId: 290399]}
artsvglaipdltnpyfpafassvvelatlrgwhvvvddyghggrsgldavehlapqvda
vigylggyadqaqtvlgrrplivldenpggaagsinfdyqhaakvavaqlmdskrqhiay
leagspvpctvrgkavagrldelgaswslivaeetaeaareaaaaflrehpetdgilafn
dlmaagvlkalsgsgrrvpedcavigmdgiplgellspqlstmaldlrevgraavellvg
llsgavtpgsqssrttlkhrlvlrest

Timeline for d4rkqb1:

• d4rkqb1 first appeared in SCOPe 2.05, called d4rkqb_
  
• d4rkqb1 appears in SCOPe 2.07