Lineage for d4pgnb_ (4pgn B:)

  1. Root: SCOPe 2.07
  2. 2413226Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2485906Fold c.94: Periplasmic binding protein-like II [53849] (1 superfamily)
    consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
    mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest
  4. 2485907Superfamily c.94.1: Periplasmic binding protein-like II [53850] (4 families) (S)
    Similar in architecture to the superfamily I but partly differs in topology
  5. 2487255Family c.94.1.0: automated matches [191309] (1 protein)
    not a true family
  6. 2487256Protein automated matches [190039] (146 species)
    not a true protein
  7. 2487564Species Desulfovibrio desulfuricans [TaxId:207559] [267990] (2 PDB entries)
  8. 2487566Domain d4pgnb_: 4pgn B: [267159]
    automated match to d4pdda_
    complexed with 3io, edo

Details for d4pgnb_

PDB Entry: 4pgn (more details), 1.8 Å

PDB Description: crystal structure of a trap periplasmic solute binding protein from desulfovibrio alaskensis g20 (dde_0634, target efi-510120) with bound indole pyruvate
PDB Compounds: (B:) Extracellular solute-binding protein, family 7

SCOPe Domain Sequences for d4pgnb_:

Sequence; same for both SEQRES and ATOM records: (download)

>d4pgnb_ c.94.1.0 (B:) automated matches {Desulfovibrio desulfuricans [TaxId: 207559]}

SCOPe Domain Coordinates for d4pgnb_:

Click to download the PDB-style file with coordinates for d4pgnb_.
(The format of our PDB-style files is described here.)

Timeline for d4pgnb_: