Lineage for d4pafa1 (4paf A:27-327)

  1. Root: SCOPe 2.07
  2. 2413226Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2485906Fold c.94: Periplasmic binding protein-like II [53849] (1 superfamily)
    consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
    mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest
  4. 2485907Superfamily c.94.1: Periplasmic binding protein-like II [53850] (4 families) (S)
    Similar in architecture to the superfamily I but partly differs in topology
  5. 2487255Family c.94.1.0: automated matches [191309] (1 protein)
    not a true family
  6. 2487256Protein automated matches [190039] (146 species)
    not a true protein
  7. 2488051Species Ruegeria pomeroyi [TaxId:246200] [267988] (3 PDB entries)
  8. 2488054Domain d4pafa1: 4paf A:27-327 [267149]
    Other proteins in same PDB: d4pafa2
    automated match to d4mnpa_
    complexed with dhb, mli

Details for d4pafa1

PDB Entry: 4paf (more details), 1.6 Å

PDB Description: crystal structure of a trap periplasmic solute binding protein from ruegeria pomeroyi dss-3 (spo1773, target efi-510260) with bound 3,4- dihydroxybenzoate
PDB Compounds: (A:) TRAP dicarboxylate transporter, DctP subunit, putative

SCOPe Domain Sequences for d4pafa1:

Sequence; same for both SEQRES and ATOM records: (download)

>d4pafa1 c.94.1.0 (A:27-327) automated matches {Ruegeria pomeroyi [TaxId: 246200]}

SCOPe Domain Coordinates for d4pafa1:

Click to download the PDB-style file with coordinates for d4pafa1.
(The format of our PDB-style files is described here.)

Timeline for d4pafa1:

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