Lineage for d2upja_ (2upj A:)

  1. Root: SCOP 1.71
  2. 546417Class b: All beta proteins [48724] (149 folds)
  3. 562942Fold b.50: Acid proteases [50629] (1 superfamily)
    barrel, closed; n=6, S=10, complex topology
  4. 562943Superfamily b.50.1: Acid proteases [50630] (2 families) (S)
  5. 562944Family b.50.1.1: Retroviral protease (retropepsin) [50631] (8 proteins)
    dimer of identical mono-domain chains, each containing (6,10) barrel
  6. 562960Protein Human immunodeficiency virus type 1 protease [50632] (1 species)
  7. 562961Species Human immunodeficiency virus type 1 [TaxId:11676] [50633] (179 PDB entries)
  8. 563287Domain d2upja_: 2upj A: [26696]

Details for d2upja_

PDB Entry: 2upj (more details), 3 Å

PDB Description: hiv-1 protease complex with u100313 ([3-[[3-[cyclopropyl [4-hydroxy-2oxo-6-[1-(phenylmethyl)propyl]-2h-pyran-3-yl] methyl]phenyl]amino]-3-oxo-propyl]carbamic acid tert-butyl ester)

SCOP Domain Sequences for d2upja_:

Sequence; same for both SEQRES and ATOM records: (download)

>d2upja_ b.50.1.1 (A:) Human immunodeficiency virus type 1 protease {Human immunodeficiency virus type 1}
pqitlwqrplvtikiggqlkealldtgaddtvleemslpgrwkpkmiggiggfikvrqyd
qilieicghkaigtvlvgptpvniigrnlltqigctlnf

SCOP Domain Coordinates for d2upja_:

Click to download the PDB-style file with coordinates for d2upja_.
(The format of our PDB-style files is described here.)

Timeline for d2upja_: