Lineage for d4n6da1 (4n6d A:28-339)

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2144291Fold c.94: Periplasmic binding protein-like II [53849] (1 superfamily)
    consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
    mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest
  4. 2144292Superfamily c.94.1: Periplasmic binding protein-like II [53850] (4 families) (S)
    Similar in architecture to the superfamily I but partly differs in topology
  5. 2145531Family c.94.1.0: automated matches [191309] (1 protein)
    not a true family
  6. 2145532Protein automated matches [190039] (127 species)
    not a true protein
  7. 2145768Species Desulfovibrio salexigens [TaxId:526222] [256368] (3 PDB entries)
  8. 2145771Domain d4n6da1: 4n6d A:28-339 [266880]
    Other proteins in same PDB: d4n6da2
    automated match to d4p47a_
    complexed with cl, edo, i3c

Details for d4n6da1

PDB Entry: 4n6d (more details), 1.7 Å

PDB Description: Crystal structure of a TRAP periplasmic solute binding protein from Desulfovibrio salexigens DSM2638 (Desal_3247), Target EFI-510112, phased with I3C, open complex, C-terminus of symmetry mate bound in ligand binding site
PDB Compounds: (A:) TRAP dicarboxylate transporter-DctP subunit

SCOPe Domain Sequences for d4n6da1:

Sequence; same for both SEQRES and ATOM records: (download)

>d4n6da1 c.94.1.0 (A:28-339) automated matches {Desulfovibrio salexigens [TaxId: 526222]}

SCOPe Domain Coordinates for d4n6da1:

Click to download the PDB-style file with coordinates for d4n6da1.
(The format of our PDB-style files is described here.)

Timeline for d4n6da1:

  • d4n6da1 first appeared in SCOPe 2.05, called d4n6da_

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