SCOPe 2.05: Domain d4mvyb2: 4mvy B:237-606

Lineage for d4mvyb2 (4mvy B:237-606)

1. Root: SCOPe 2.05

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.26: Adenine nucleotide alpha hydrolase-like [52373] (3 superfamilies)
   core: 3 layers, a/b/a ; parallel beta-sheet of 5 strands, order 32145

4. Superfamily c.26.1: Nucleotidylyl transferase [52374] (6 families)

5. Family c.26.1.0: automated matches [191377] (1 protein)
   not a true family

6. Protein automated matches [190459] (41 species)
   not a true protein

7. Species Trypanosome (Trypanosoma brucei) [TaxId:5691] [188998] (16 PDB entries)

8. Domain d4mvyb2: 4mvy B:237-606 [266788]
   Other proteins in same PDB: d4mvya2, d4mvyb1
   automated match to d1rqga2
   protein/RNA complex; complexed with 387, dms, gol, met

Details for d4mvyb2

PDB Entry: 4mvy, 2.31 Å

PDB Description: Trypanosoma brucei methionyl-tRNA synthetase in complex with inhibitor 1-{3-[(3,5-dichlorobenzyl)amino]propyl}-3-(3-hydroxyphenyl)urea (Chem 1387)

PDB Compounds: (B:) Methionyl-tRNA synthetase

SCOPe Domain Sequences for d4mvyb2:

Sequence, based on SEQRES records:

>d4mvyb2 c.26.1.0 (B:237-606) automated matches {Trypanosome (Trypanosoma brucei) [TaxId: 5691]}
kvekvffvtspiyyvnaaphighvystlitdvigryhrvkgervfaltgtdehgqkvaea
akqkqvspydfttavagefkkcfeqmdysidyfirttneqhkavvkelwtkleqkgdiyl
gryegwysisdesfltpqnitdgvdkdgnpckvslesghvvtwvseenymfrlsafrerl
lewyhanpgcivpefrrreviravekglpdlsvsraratlhnwaipvpgnpdhcvyvwld
altnyltgsrlrvdesgkevslvddfnelerfpadvhvigkdilkfhaiywpafllsagl
plpkkivahgwwtkdrkkiskslgnvfdpvekaeefgydalkyfllresgfsddgdysdk
nmiarlngel

Sequence, based on observed residues (ATOM records):

>d4mvyb2 c.26.1.0 (B:237-606) automated matches {Trypanosome (Trypanosoma brucei) [TaxId: 5691]}
kvekvffvtspiyyvnaaphighvystlitdvigryhrvkgervfaltgtdehgqkvaea
akqkqvspydfttavagefkkcfeqmdysidyfirttneqhkavvkelwtkleqkgdiyl
gryegwysisdesfltpqnitdgvdkvslesghvvtwvseenymfrlsafrerllewyha
npgcivpefrrreviravekglpdlsvsraratlhnwaipvpgnpdhcvyvwldaltnyl
tgsrlrvdesgkevslvddfnelerfpadvhvigkdilkfhaiywpafllsaglplpkki
vahgwwtkdrkkiskslgnvfdpvekaeefgydalkyfllresgfsddgdysdknmiarl
ngel

Timeline for d4mvyb2:

• d4mvyb2 is new in SCOPe 2.05-stable
  
• d4mvyb2 appears in SCOPe 2.06
  
• d4mvyb2 appears in the current release, SCOPe 2.08