SCOPe 2.05: Domain d4c5mc_: 4c5m C:

Lineage for d4c5mc_ (4c5m C:)

1. Root: SCOPe 2.05

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.72: Ribokinase-like [53612] (3 superfamilies)
   core: 3 layers: a/b/a; mixed beta-sheet of 8 strands, order 21345678, strand 7 is antiparallel to the rest
   potential superfamily: members of this fold have similar functions but different ATP-binding sites

4. Superfamily c.72.1: Ribokinase-like [53613] (6 families)
   has extra strand located between strands 2 and 3

5. Family c.72.1.0: automated matches [191321] (1 protein)
   not a true family

6. Protein automated matches [190117] (37 species)
   not a true protein

7. Species Staphylococcus aureus [TaxId:158878] [237768] (4 PDB entries)

8. Domain d4c5mc_: 4c5m C: [265989]
   automated match to d4c5na_
   complexed with acp, so4

Details for d4c5mc_

PDB Entry: 4c5m, 1.45 Å

PDB Description: Structure of the pyridoxal kinase from Staphylococcus aureus in complex with AMP-PCP

PDB Compounds: (C:) phosphomethylpyrimidine kinase

SCOPe Domain Sequences for d4c5mc_:

Sequence, based on SEQRES records:

>d4c5mc_ c.72.1.0 (C:) automated matches {Staphylococcus aureus [TaxId: 158878]}
galkkvltiagsdtsagagmqadlktfqeldtygmvaltaivtmdkdtwshdvtplpmdv
fekqletalsigpdaiktgmlgteeiikragevyeasnaqyfvvdpvmvckgedevlnpg
nteamikyllpkatvvtpnlfeagqlsglgklnsiedmkkaatiifdkgaqhviikggka
ldqdksydlyydgqtfyqlttdmfqqsynhgagctfaaattaylangkspkeavisakaf
vasaikngwkmndfvgpvdhgaynriehidvevtev

Sequence, based on observed residues (ATOM records):

>d4c5mc_ c.72.1.0 (C:) automated matches {Staphylococcus aureus [TaxId: 158878]}
galkkvltiagsdtsagagmqadlktfqeldtygmvaltaivtmdkdtwshdvtplpmdv
fekqletalsigpdaiktgmlgteeiikragevyeasnaqyfvvdpvmvcdevlnpgnte
amikyllpkatvvtpnlfeagqlsglgklnsiedmkkaatiifdkgaqhviikggkaldq
dksydlyydgqtfyqlttdmfqqsynhgagctfaaattaylangkspkeavisakafvas
aikngwkmndfvgpvdhgaynriehidvevtev

Timeline for d4c5mc_:

• d4c5mc_ is new in SCOPe 2.05-stable
  
• d4c5mc_ is called d4c5mc1 in SCOPe 2.06
  
• d4c5mc_ appears in the current release, SCOPe 2.08, called d4c5mc1