Lineage for d4bdub1 (4bdu B:2-230)

  1. Root: SCOPe 2.05
  2. 1886641Class d: Alpha and beta proteins (a+b) [53931] (381 folds)
  3. 1898883Fold d.22: GFP-like [54510] (1 superfamily)
    beta-sheet folds into a barrel (n=11, S=14) around the central helix
  4. 1898884Superfamily d.22.1: GFP-like [54511] (3 families) (S)
  5. 1898885Family d.22.1.1: Fluorescent proteins [54512] (6 proteins)
  6. 1899146Protein automated matches [190406] (16 species)
    not a true protein
  7. 1899314Species Jellyfish (Aequorea victoria) [TaxId:6100] [188134] (40 PDB entries)
  8. 1899380Domain d4bdub1: 4bdu B:2-230 [265923]
    Other proteins in same PDB: d4bdua2, d4bdub2, d4bduc2, d4bdud2
    automated match to d4bdud1

Details for d4bdub1

PDB Entry: 4bdu (more details), 3 Å

PDB Description: bax bh3-in-groove dimer (gfp)
PDB Compounds: (B:) green fluorescent protein, apoptosis regulator bax

SCOPe Domain Sequences for d4bdub1:

Sequence; same for both SEQRES and ATOM records: (download)

>d4bdub1 d.22.1.1 (B:2-230) automated matches {Jellyfish (Aequorea victoria) [TaxId: 6100]}
skgeelftgvvpilveldgdvnghkfsvsgegegdatygkltlkficttgklpvpwptlv
ttfgygvqcfsrypdhmkqhdffksampegyvqertiffkddgnyktraevkfegdtlvn
rielkgidfkedgnilghkleynynshnvyimadkqkngikvnfkirhniedgsvqladh
yqqntpigdgpvllpdnhylstqsnlskdpnekrdhmvllefvtaagit

SCOPe Domain Coordinates for d4bdub1:

Click to download the PDB-style file with coordinates for d4bdub1.
(The format of our PDB-style files is described here.)

Timeline for d4bdub1: