SCOPe 2.05: Domain d3gbvb_: 3gbv B:

Lineage for d3gbvb_ (3gbv B:)

1. Root: SCOPe 2.05

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.93: Periplasmic binding protein-like I [53821] (1 superfamily)
   consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
   parallel beta-sheet of 6 strands, order 213456

4. Superfamily c.93.1: Periplasmic binding protein-like I [53822] (2 families)
   Similar in architecture to the superfamily II but partly differs in topology

5. Family c.93.1.0: automated matches [191439] (1 protein)
   not a true family

6. Protein automated matches [190646] (60 species)
   not a true protein

7. Species Bacteroides fragilis [TaxId:272559] [267837] (1 PDB entry)

8. Domain d3gbvb_: 3gbv B: [264806]
   automated match to d4wuta_
   complexed with edo, na

Details for d3gbvb_

PDB Entry: 3gbv, 2.2 Å

PDB Description: crystal structure of a putative laci transcriptional regulator from bacteroides fragilis

PDB Compounds: (B:) Putative LacI-family transcriptional regulator

SCOPe Domain Sequences for d3gbvb_:

Sequence, based on SEQRES records:

>d3gbvb_ c.93.1.0 (B:) automated matches {Bacteroides fragilis [TaxId: 272559]}
kkytfacllpkhlegeywtdvqkgireavttysdfnisanithydpydynsfvatsqavi
eeqpdgvmfaptvpqytkgftdalnelgipyiyidsqikdapplaffgqnshqsgyfaar
mlmllavndreivifrkihegvigsnqqesreigfrqymqehhpacnilelnlhadlnie
dsrmlddffrehpdvkhgitfnskvyiigeylqqrrksdfsligydllernvtclkegtv
sfliaqqpelqgfnsiktlcdhlifrkevactnympidlltkenidyyh

Sequence, based on observed residues (ATOM records):

>d3gbvb_ c.93.1.0 (B:) automated matches {Bacteroides fragilis [TaxId: 272559]}
kkytfacllpkhlegeywtdvqkgireavttysdfnisanithydpydynsfvatsqavi
eeqpdgvmfaptvpqytkgftdalnelgipyiyidsqikdapplaffgqnshqsgyfaar
mlmllavndreivifrkihegvigsnqqesreigfrqymqehhpacnilelnlhadleds
rmlddffrehpdvkhgitfnskvyiigeylqqrrksdfsligydllernvtclkegtvsf
liaqqpelqgfnsiktlcdhlifrkevactnympidlltkenidyyh

Timeline for d3gbvb_:

• d3gbvb_ is new in SCOPe 2.05-stable
  
• d3gbvb_ appears in SCOPe 2.06
  
• d3gbvb_ appears in the current release, SCOPe 2.08