Lineage for d4rqpb_ (4rqp B:)

  1. Root: SCOPe 2.07
  2. 2352458Class b: All beta proteins [48724] (178 folds)
  3. 2430785Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. 2431062Superfamily b.121.4: Positive stranded ssRNA viruses [88633] (10 families) (S)
  5. 2431063Family b.121.4.1: Picornaviridae-like VP (VP1, VP2, VP3 and VP4) [88634] (10 proteins)
    the order of the chains N-VP0-VP3-VP1-C is as in the polyprotein; VP0 is cleaved later upon capsid assembly to VP4 and VP2
    there is a different order in the shuffled genome of insect picorna-like proteins (Cricket paralysis virus)
  6. 2431354Protein automated matches [190854] (25 species)
    not a true protein
  7. 2431474Species Human enterovirus 71 [TaxId:39054] [195913] (16 PDB entries)
  8. 2431493Domain d4rqpb_: 4rqp B: [261955]
    Other proteins in same PDB: d4rqpc_, d4rqpg_, d4rqpk_, d4rqpo_
    automated match to d3vbhc_

Details for d4rqpb_

PDB Entry: 4rqp (more details), 3.15 Å

PDB Description: crystal structure of the natually occurring empty particle of a clinical c4 strain ev71
PDB Compounds: (B:) capsid protein vp3

SCOPe Domain Sequences for d4rqpb_:

Sequence, based on SEQRES records: (download)

>d4rqpb_ b.121.4.1 (B:) automated matches {Human enterovirus 71 [TaxId: 39054]}
gfptelkpgtnqflttddgvsapilpnfhptpcihipgevrnllelcqvetilevnnvpt
natslmerlrfpvsaqagkgelcavfradpgrsgpwqstllgqlcgyytqwsgslevtfm
ftgsfmatgkmliaytppggplpkdratamlgthviwdfglqssvtlvipwisnthyrah
ardgvfdyyttglvsiwyqtnyvvpigapntayiialaaaqknftmqlckdasdilqt

Sequence, based on observed residues (ATOM records): (download)

>d4rqpb_ b.121.4.1 (B:) automated matches {Human enterovirus 71 [TaxId: 39054]}
gfptelkpgtnqflttddgvsapilpnfhptpcihipgevrnllelcqvetilevnnvpt
natslmerlrfpvsaqagkgelcavfradpgrsgpwqstllgqlcgyytqwsgslevtfm
ftgsfmatgkmliaytppggplpkdratamlgthviwdfglqssvtlvipwisntyttgl
vsiwyqtnyvvpigapntayiialaaaqknftmqlckdasdilqt

SCOPe Domain Coordinates for d4rqpb_:

Click to download the PDB-style file with coordinates for d4rqpb_.
(The format of our PDB-style files is described here.)

Timeline for d4rqpb_: