SCOPe 2.04: Domain d1dm4.1: 1dm4 A:,B:

Lineage for d1dm4.1 (1dm4 A:,B:)

1. Root: SCOPe 2.04

2. Class b: All beta proteins [48724] (176 folds)

3. Fold b.47: Trypsin-like serine proteases [50493] (1 superfamily)
   barrel, closed; n=6, S=8; greek-key
   duplication: consists of two domains of the same fold

4. Superfamily b.47.1: Trypsin-like serine proteases [50494] (5 families)

5. Family b.47.1.2: Eukaryotic proteases [50514] (48 proteins)

6. Protein Thrombin [50531] (2 species)

7. Species Human (Homo sapiens) [TaxId:9606] [50532] (169 PDB entries)
   Uniprot P00734 331-361,364-421 ! Uniprot P00734 334-360 364-510 518-619 ! Uniprot P00734 328-620 ! Uniprot P00734 355-621 ! Uniprot P00734 328-620

8. Domain d1dm4.1: 1dm4 A:,B: [26171]
   mutant

Details for d1dm4.1

PDB Entry: 1dm4, 2.5 Å

PDB Description: ser195ala mutant of human thrombin complexed with fibrinopeptide a (7- 16)

PDB Compounds: (A:) protein (alpha thrombin:light chain), (B:) protein (mutant alpha thrombin:heavy chain)

SCOPe Domain Sequences for d1dm4.1:

Sequence, based on SEQRES records:

>g1dm4.1 b.47.1.2 (A:,B:) Thrombin {Human (Homo sapiens) [TaxId: 9606]}
tfgsgeadcglrplfekksledkterellesyiXivegsdaeigmspwqvmlfrkspqel
lcgaslisdrwvltaahcllyppwdknftendllvrigkhsrtryerniekismlekiyi
hprynwrenldrdialmklkkpvafsdyihpvclpdretaasllqagykgrvtgwgnlke
twtanvgkgqpsvlqvvnlpiverpvckdstriritdnmfcagykpdegkrgdacegdag
gpfvmkspfnnrwyqmgivswgegcdrdgkygfythvfrlkkwiqkvidqfge

Sequence, based on observed residues (ATOM records):

>g1dm4.1 b.47.1.2 (A:,B:) Thrombin {Human (Homo sapiens) [TaxId: 9606]}
tfgsgeadcglrplfekksledkterellesyiXivegsdaeigmspwqvmlfrkspqel
lcgaslisdrwvltaahcllyppwdknftendllvrigkhsrtryerniekismlekiyi
hprynwrenldrdialmklkkpvafsdyihpvclpdretaasllqagykgrvtgwgnlke
tgqpsvlqvvnlpiverpvckdstriritdnmfcagykpdegkrgdacegdaggpfvmks
pfnnrwyqmgivswgegcdrdgkygfythvfrlkkwiqkvidqfge

Timeline for d1dm4.1:

• d1dm4.1 first appeared (with stable ids) in SCOP 1.55
  
• d1dm4.1 appears in SCOPe 2.03
  
• d1dm4.1 appears in SCOPe 2.05
  
• d1dm4.1 appears in the current release, SCOPe 2.08