SCOPe 2.08: Domain d4rk6b_: 4rk6 B:

Lineage for d4rk6b_ (4rk6 B:)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.93: Periplasmic binding protein-like I [53821] (1 superfamily)
   consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
   parallel beta-sheet of 6 strands, order 213456

4. Superfamily c.93.1: Periplasmic binding protein-like I [53822] (2 families)
   Similar in architecture to the superfamily II but partly differs in topology

5. Family c.93.1.0: automated matches [191439] (1 protein)
   not a true family

6. Protein automated matches [190646] (77 species)
   not a true protein

7. Species Weissella paramesenteroides [TaxId:585506] [260797] (2 PDB entries)

8. Domain d4rk6b_: 4rk6 B: [260798]
   automated match to d2nzug_
   complexed with glc

Details for d4rk6b_

PDB Entry: 4rk6, 1.76 Å

PDB Description: crystal structure of laci family transcriptional regulator ccpa from weissella paramesenteroides, target efi-512926, with bound glucose

PDB Compounds: (B:) Glucose-resistance amylase regulator

SCOPe Domain Sequences for d4rk6b_:

Sequence, based on SEQRES records:

>d4rk6b_ c.93.1.0 (B:) automated matches {Weissella paramesenteroides [TaxId: 585506]}
rvvgvvvplihtnfadeiikglyettissgyellityldededhqyqvfqtllsrqvgav
fmlsldipswmidklleeqisvisltallseqisavtsnefemmnsivdylidmghknia
lvgdtklttnisstrrtnfiksmtdhnlayeniflygndhsyetgytsvttgydinqlpf
taaiatadmvgqglinamsdhgktvpedlsivtidglqqteiarpklttvkqdfpeigri
amqlfldsdsektepqiiyipteliqrdsvlnlns

Sequence, based on observed residues (ATOM records):

>d4rk6b_ c.93.1.0 (B:) automated matches {Weissella paramesenteroides [TaxId: 585506]}
rvvgvvvplihtnfadeiikglyettissgyellityldededhqyqvfqtllsrqvgav
fmlsldipswmidklleeqisvisltallseqisavtsnefemmnsivdylidmghknia
lvgdtklttnisstrrtnfiksmtdhnlayeniflygndhsyetgytsvttgydinqlpf
taaiatadmvgqglinamsdhgktvpedlsivtidglqqteiarpklttvkqdfpeigri
amqlfldspqiiyipteliqrdsvlnlns

Timeline for d4rk6b_:

• d4rk6b_ first appeared in SCOPe 2.04
  
• d4rk6b_ appears in SCOPe 2.07