SCOPe 2.06: Domain d4rk9a_: 4rk9 A:

Lineage for d4rk9a_ (4rk9 A:)

1. Root: SCOPe 2.06

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.94: Periplasmic binding protein-like II [53849] (1 superfamily)
   consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
   mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest

4. Superfamily c.94.1: Periplasmic binding protein-like II [53850] (4 families)
   Similar in architecture to the superfamily I but partly differs in topology

5. Family c.94.1.0: automated matches [191309] (1 protein)
   not a true family

6. Protein automated matches [190039] (140 species)
   not a true protein

7. Species Bacillus licheniformis [TaxId:279010] [260795] (1 PDB entry)

8. Domain d4rk9a_: 4rk9 A: [260796]
   automated match to d3jzja_

Details for d4rk9a_

PDB Entry: 4rk9, 2.15 Å

PDB Description: crystal structure of sugar transporter bl01359 from bacillus licheniformis, target efi-510856, in complex with stachyose

PDB Compounds: (A:) Carbohydrate ABC transporter substrate-binding protein MsmE

SCOPe Domain Sequences for d4rk9a_:

Sequence; same for both SEQRES and ATOM records:

>d4rk9a_ c.94.1.0 (A:) automated matches {Bacillus licheniformis [TaxId: 279010]}
vtltmfstmtndsekntlrsiaddfekenegikidisfpgpdyenmlrvkmaandmpdlf
dthgwakirygeytadlkdmdwvkhldpnldpilkdekgkvyaypfnqakdgivynagll
kkyglkppqtldelmhaletikeksngsvipfwfagsdkgalaqfydqlatpllitddrr
nekkalengtfdwsdytllaetfkemqekqlinkdiltakpsqlvelmaqekigftlsvt
sigpdtrevnpdiqlgvmptpavyegdkpswiggerhtvavwkdsehleeakrfiefaaq
pkyvkkiaeatsfpqaltnteaenyyskfydqyeeikiepyfdrvylpsgmwdvmgttgq
ellagtltpkqvsekmkqeysrlq

Timeline for d4rk9a_:

• d4rk9a_ first appeared in SCOPe 2.04
  
• d4rk9a_ appears in SCOPe 2.05
  
• d4rk9a_ appears in SCOPe 2.07
  
• d4rk9a_ appears in the current release, SCOPe 2.08