Lineage for Species: Agrobacterium tumefaciens [TaxId: 176299]

  1. Root: SCOPe 2.06
  2. 2089713Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2162067Fold c.94: Periplasmic binding protein-like II [53849] (1 superfamily)
    consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
    mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest
  4. 2162068Superfamily c.94.1: Periplasmic binding protein-like II [53850] (4 families) (S)
    Similar in architecture to the superfamily I but partly differs in topology
  5. 2163419Family c.94.1.0: automated matches [191309] (1 protein)
    not a true family
  6. 2163420Protein automated matches [190039] (140 species)
    not a true protein
  7. 2163469Species Agrobacterium tumefaciens [TaxId:176299] [260526] (9 PDB entries)

PDB entries in Species: Agrobacterium tumefaciens [TaxId: 176299]:

  1. Domain(s) for 4p0i:
    1. 2163474Domain d4p0ia_: 4p0i A: [260527]
      automated match to d2m8ca_
      complexed with edo, peg
    2. 2163475Domain d4p0ib_: 4p0i B: [260532]
      automated match to d2m8ca_
      complexed with edo, peg
  2. Domain(s) for 4pow:
    1. 2163470Domain d4powa_: 4pow A: [260742]
      automated match to d2m8ca_
      complexed with edo, op1
    2. 2163471Domain d4powb_: 4pow B: [263559]
      automated match to d4p0ib_
      complexed with edo, op1
  3. Domain(s) for 4pox:
    1. 2163476Domain d4poxa_: 4pox A: [267196]
      automated match to d4p0ib_
      complexed with 15p, 2w2, edo, peg
    2. 2163477Domain d4poxb_: 4pox B: [267197]
      automated match to d4p0ib_
      complexed with 15p, 2w2, edo, peg
  4. Domain(s) for 4pp0:
    1. 2163472Domain d4pp0a_: 4pp0 A: [260561]
      automated match to d1hsla_
      complexed with edo, op1, peg
    2. 2163473Domain d4pp0b_: 4pp0 B: [260747]
      automated match to d1hsla_
      complexed with edo, op1, peg
  5. Domain(s) for 5ito:
    1. 2163484Domain d5itoa_: 5ito A: [326635]
      automated match to d4p0ib_
      complexed with 1pe, 6db, edo, peg, toe
    2. 2163485Domain d5itob_: 5ito B: [326710]
      automated match to d4p0ib_
      complexed with 1pe, 6db, edo, peg, toe
  6. Domain(s) for 5ot8:
    1. 2163482Domain d5ot8a_: 5ot8 A: [343171]
      automated match to d4p0ib_
      protein/DNA complex; complexed with 6db, cl, edo, peg, so4; mutant
    2. 2163483Domain d5ot8b_: 5ot8 B: [343164]
      automated match to d4p0ib_
      protein/DNA complex; complexed with 6db, cl, edo, peg, so4; mutant
  7. Domain(s) for 5ot9:
    1. 2163486Domain d5ot9a_: 5ot9 A: [343211]
      automated match to d4p0ib_
      protein/DNA complex; complexed with aoz, edo
    2. 2163487Domain d5ot9b_: 5ot9 B: [343187]
      automated match to d4p0ib_
      protein/DNA complex; complexed with aoz, edo
  8. Domain(s) for 5ota:
    1. 2163478Domain d5otaa_: 5ota A: [343178]
      automated match to d4p0ib_
      protein/DNA complex; complexed with aqq, edo
    2. 2163479Domain d5otab_: 5ota B: [343188]
      automated match to d4p0ib_
      protein/DNA complex; complexed with aqq, edo
  9. Domain(s) for 5otc:
    1. 2163480Domain d5otca_: 5otc A: [343266]
      automated match to d4p0ib_
      protein/DNA complex; complexed with aqk, cl, edo, peg, pge
    2. 2163481Domain d5otcb_: 5otc B: [343245]
      automated match to d4p0ib_
      protein/DNA complex; complexed with aqk, cl, edo, peg, pge

More info for Species Agrobacterium tumefaciens [TaxId:176299] from c.94.1.0 automated matches

Timeline for Species Agrobacterium tumefaciens [TaxId:176299] from c.94.1.0 automated matches: