SCOPe 2.08: Domain d4ov0a_: 4ov0 A:

Lineage for d4ov0a_ (4ov0 A:)

1. Root: SCOPe 2.08

2. Class f: Membrane and cell surface proteins and peptides [56835] (69 folds)

3. Fold f.13: Class A G protein-coupled receptor (GPCR)-like [81322] (1 superfamily)
   core: up-and-down bundle of seven transmembrane helices tilted 20 degrees with respect to the plane of the membrane

4. Superfamily f.13.1: Class A G protein-coupled receptor (GPCR)-like [81321] (5 families)
   Pfam PF13853. Phylogeny described in PubMed 12761335

5. Family f.13.1.1: Bacteriorhodopsin-like [81319] (6 proteins)

6. Protein Bacteriorhodopsin [56871] (3 species)
   a light-driven proton pump

7. Species Halobacterium sp. [TaxId:64091] [346420] (7 PDB entries)

8. Domain d4ov0a_: 4ov0 A: [259881]
   automated match to d1p8ha_
   complexed with ret

Details for d4ov0a_

PDB Entry: 4ov0, 2 Å

PDB Description: structure of bacteriorhdopsin transferred from amphipol a8-35 to a lipidic mesophase

PDB Compounds: (A:) bacteriorhodopsin

SCOPe Domain Sequences for d4ov0a_:

Sequence, based on SEQRES records:

>d4ov0a_ f.13.1.1 (A:) Bacteriorhodopsin {Halobacterium sp. [TaxId: 64091]}
rpewiwlalgtalmglgtlyflvkgmgvsdpdakkfyaittlvpaiaftmylsmllgygl
tmvpfggeqnpiywaryadwlfttplllldlallvdadqgtilalvgadgimigtglvga
ltkvysyrfvwwaistaamlyilyvlffgftskaesmrpevastfkvlrnvtvvlwsayp
vvwligsegagivplnietllfmvldvsakvgfglillrs

Sequence, based on observed residues (ATOM records):

>d4ov0a_ f.13.1.1 (A:) Bacteriorhodopsin {Halobacterium sp. [TaxId: 64091]}
rpewiwlalgtalmglgtlyflvkgmgvsdpdakkfyaittlvpaiaftmylsmllgygl
tmvpfggeqnpiywaryadwlfttplllldlallvdadqgtilalvgadgimigtglvga
ltkvysyrfvwwaistaamlyilyvlffgfmrpevastfkvlrnvtvvlwsaypvvwlig
segagivplnietllfmvldvsakvgfglillrs

Timeline for d4ov0a_:

• d4ov0a_ first appeared in SCOPe 2.04
  
• d4ov0a_ appears in SCOPe 2.07