SCOPe 2.08: Domain d4qa1b1: 4qa1 B:14-377

Lineage for d4qa1b1 (4qa1 B:14-377)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.42: Arginase/deacetylase [52767] (1 superfamily)
   3 layers: a/b/a, parallel beta-sheet of 8 strands, order 21387456

4. Superfamily c.42.1: Arginase/deacetylase [52768] (3 families)

5. Family c.42.1.2: Histone deacetylase, HDAC [52773] (4 proteins)
   automatically mapped to Pfam PF00850

6. Protein automated matches [190786] (1 species)
   not a true protein

7. Species Human (Homo sapiens) [TaxId:9606] [188039] (41 PDB entries)

8. Domain d4qa1b1: 4qa1 B:14-377 [258791]
   Other proteins in same PDB: d4qa1b2, d4qa1d2
   automated match to d2v5wb_
   complexed with b3n, gol, k, zn

Details for d4qa1b1

PDB Entry: 4qa1, 1.92 Å

PDB Description: Crystal structure of A188T HDAC8 in complex with M344

PDB Compounds: (B:) Histone deacetylase 8

SCOPe Domain Sequences for d4qa1b1:

Sequence; same for both SEQRES and ATOM records:

>d4qa1b1 c.42.1.2 (B:14-377) automated matches {Human (Homo sapiens) [TaxId: 9606]}
lvpvyiyspeyvsmcdslakipkrasmvhslieayalhkqmrivkpkvasmeematfhtd
aylqhlqkvsqegdddhpdsieyglgydcpategifdyaaaiggatitaaqclidgmckv
ainwsggwhhakkdeasgfcylndavlgilrlrrkferilyvdldlhhgdgvedtfsfts
kvmtvslhkfspgffpgtgdvsdvglgkgryysvnvpiqdgiqdekyyqicesvlkevyq
afnpkavvlqlgadtiagdpmcsfnmtpvgigkclkyilqwqlatlilggggynlantar
cwtyltgvilgktlsseipdhefftaygpdyvleitpscrpdrnephriqqilnyikgnl
khvv

Timeline for d4qa1b1:

• d4qa1b1 first appeared in SCOPe 2.04, called d4qa1b_
  
• d4qa1b1 appears in SCOPe 2.07