Lineage for d4o55a_ (4o55 A:)

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2122050Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
    3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
  4. 2123751Superfamily c.55.3: Ribonuclease H-like [53098] (15 families) (S)
    consists of one domain of this fold
  5. 2124026Family c.55.3.2: Retroviral integrase, catalytic domain [53107] (2 protein domains)
  6. 2124027Protein Retroviral integrase, catalytic domain [53108] (4 species)
  7. 2124033Species Human immunodeficiency virus type 1 [TaxId:11676] [53110] (53 PDB entries)
  8. 2124101Domain d4o55a_: 4o55 A: [258022]
    automated match to d1b9da_
    complexed with lf9, so4

Details for d4o55a_

PDB Entry: 4o55 (more details), 2.24 Å

PDB Description: hiv-1 integrase catalytic core domain complexed with allosteric inhibitor (2s)-tert-butoxy[6-(5-chloro-1h-benzimidazol-2-yl)-2,5- dimethyl-4-phenylpyridin-3-yl]ethanoic acid
PDB Compounds: (A:) integrase

SCOPe Domain Sequences for d4o55a_:

Sequence, based on SEQRES records: (download)

>d4o55a_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
cspgiwqldcthlegkvilvavhvasgyieaevipaetgqetayfllklagrwpvktvht
dngsnftsttvkaacwwagikqefgipynpqsqgviesmnkelkkiigqvrdqaehlkta
vqmavfihnkkrkggiggysagerivdiiatdiq

Sequence, based on observed residues (ATOM records): (download)

>d4o55a_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
cspgiwqldcthlegkvilvavhvasgyieaevipaetgqetayfllklagrwpvktvht
dngsnftsttvkaacwwagikqefgesmnkelkkiigqvrdqaehlktavqmavfihnkk
rkgggysagerivdiiatdiq

SCOPe Domain Coordinates for d4o55a_:

Click to download the PDB-style file with coordinates for d4o55a_.
(The format of our PDB-style files is described here.)

Timeline for d4o55a_: