SCOPe 2.06: Domain d4pfia_: 4pfi A:

Lineage for d4pfia_ (4pfi A:)

1. Root: SCOPe 2.06

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.94: Periplasmic binding protein-like II [53849] (1 superfamily)
   consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
   mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest

4. Superfamily c.94.1: Periplasmic binding protein-like II [53850] (4 families)
   Similar in architecture to the superfamily I but partly differs in topology

5. Family c.94.1.0: automated matches [191309] (1 protein)
   not a true family

6. Protein automated matches [190039] (140 species)
   not a true protein

7. Species Marinobacter aquaeolei [TaxId:351348] [257503] (1 PDB entry)

8. Domain d4pfia_: 4pfi A: [257504]
   automated match to d2wx9a_
   complexed with na

Details for d4pfia_

PDB Entry: 4pfi, 2.3 Å

PDB Description: crystal structure of a trap periplasmic solute binding protein from marinobacter aquaeolei vt8 (maqu_2829, target efi-510133), apo open structure

PDB Compounds: (A:) TRAP dicarboxylate transporter-DctP subunit

SCOPe Domain Sequences for d4pfia_:

Sequence, based on SEQRES records:

>d4pfia_ c.94.1.0 (A:) automated matches {Marinobacter aquaeolei [TaxId: 351348]}
vtwrfaleeiegsvqhlyaqqfreqvealsggrievdvfpygslgtsaqlteltrngsvn
lafaspghladtvpetglfnlhfllpeeqeparrlleapafisafepayhnaglqllgfv
pegwmtwtannplrtpsdfqglrfrtmtsetaaeafrsygadpvqtpfaqvysdlqlgni
dgqsnpvfaieemgfhevqnvltmarasrfiasvvanedwfaglpsqerkwleetiaqls
eeawtlqedlnkerletileqggirvvrltederaafrdaslparqrfieltgekgqali
qrats

Sequence, based on observed residues (ATOM records):

>d4pfia_ c.94.1.0 (A:) automated matches {Marinobacter aquaeolei [TaxId: 351348]}
vtwrfaleeiegsvqhlyaqqfreqvealsggrievdvfpygslaqlteltrngsvnlaf
aspghladtvpetglfnlhfllpeeqeparrlleapafisafepayhnaglqllgfvpeg
wmtwtannplrtpsdfqglrfrtmtsetaaeafrsygadpvqtpfaqvysdlqlgnidgq
snpvfaieemgfhevqnvltmarasrfiasvvanedwfaglpsqerkwleetiaqlseea
wtlqedlnkerletileqggirvvrltederaafrdaslparqrfieltgekgqaliqra
ts

Timeline for d4pfia_:

• d4pfia_ first appeared in SCOPe 2.04
  
• d4pfia_ appears in SCOPe 2.05
  
• d4pfia_ appears in SCOPe 2.07
  
• d4pfia_ appears in the current release, SCOPe 2.08