SCOPe 2.06: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.06
Class a: All alpha proteins [46456] (289 folds)
Fold a.143: RPB6/omega subunit-like [63561] (1 superfamily)
core: 2 helices and adjacent loops

Superfamily a.143.1: RPB6/omega subunit-like [63562] (2 families)

the bacterial omega and eukaryotic RPB6 subunits both function in polymerase assembly; the common core is involved in conserved interactions with other subunits

Family a.143.1.1: RNA polymerase omega subunit [63563] (2 proteins)
4 helices; irregular array
Protein automated matches [257263] (2 species)
not a true protein

Species:

Thermus thermophilus [TaxId:274] [326512] (1 PDB entry)
- Domain for 5tmf:
  - Domain d5tmfe_: 5tmf E: [326513]
    Other proteins in same PDB: d5tmfc_, d5tmfd_, d5tmff1, d5tmff2, d5tmff3
    automated match to d1i6ve_
    complexed with mg, ne6, po4, zn

Thermus thermophilus [TaxId:300852] [257264] (3 PDB entries)

Domain for 4oio:

Domain d4oioe_: 4oio E: [257265]
Other proteins in same PDB: d4oioc_, d4oiod_, d4oiof1, d4oiof2, d4oiof3
automated match to d1i6ve_
protein/DNA complex; protein/RNA complex; complexed with 2tm, atp, mg, zn

Domain for 4q4z:

Domain d4q4ze_: 4q4z E: [258310]
Other proteins in same PDB: d4q4za1, d4q4za2, d4q4zb1, d4q4zb2, d4q4zc_, d4q4zd_, d4q4zf1, d4q4zf2, d4q4zf3
automated match to d1i6ve_
protein/DNA complex; protein/RNA complex; complexed with 2tm, atp, mg, zn

Domain for 4q5s:
- Domain d4q5se_: 4q5s E: [259966]
  Other proteins in same PDB: d4q5sc_, d4q5sd_, d4q5sf1, d4q5sf2, d4q5sf3
  automated match to d1i6ve_
  protein/DNA complex; protein/RNA complex; complexed with atp, mg, zn

More info for Protein automated matches from a.143.1.1: RNA polymerase omega subunit

Timeline for Protein automated matches from a.143.1.1: RNA polymerase omega subunit:

Protein automated matches from a.143.1.1: RNA polymerase omega subunit first appeared in SCOPe 2.04
Protein automated matches from a.143.1.1: RNA polymerase omega subunit appears in SCOPe 2.05
Protein automated matches from a.143.1.1: RNA polymerase omega subunit appears in SCOPe 2.07
Protein automated matches from a.143.1.1: RNA polymerase omega subunit appears in the current release, SCOPe 2.08