SCOPe 2.04: Domain d4jkja_: 4jkj A:

Lineage for d4jkja_ (4jkj A:)

1. Root: SCOPe 2.04

2. Class d: Alpha and beta proteins (a+b) [53931] (380 folds)

3. Fold d.3: Cysteine proteinases [54000] (1 superfamily)
   consists of one alpha-helix and 4 strands of antiparallel beta-sheet and contains the catalytic triad Cys-His-Asn

4. Superfamily d.3.1: Cysteine proteinases [54001] (23 families)
   the constitute families differ by insertion into and circular permutation of the common catalytic core made of one alpha-helix and 3-strands of beta-sheet

5. Family d.3.1.6: Ubiquitin carboxyl-terminal hydrolase UCH-L [54050] (3 proteins)
   automatically mapped to Pfam PF01088

6. Protein Ubiquitin carboxyl-terminal hydrolase isozyme l1 [142856] (1 species)

7. Species Human (Homo sapiens) [TaxId:9606] [142857] (4 PDB entries)
   Uniprot P09936 1-223

8. Domain d4jkja_: 4jkj A: [256792]
   automated match to d2lena_
   complexed with so4

Details for d4jkja_

PDB Entry: 4jkj, 2.15 Å

PDB Description: Crystal Structure of the S18Y Variant of Ubiquitin Carboxy-terminal Hydrolase L1

PDB Compounds: (A:) Ubiquitin carboxyl-terminal hydrolase isozyme L1

SCOPe Domain Sequences for d4jkja_:

Sequence; same for both SEQRES and ATOM records:

>d4jkja_ d.3.1.6 (A:) Ubiquitin carboxyl-terminal hydrolase isozyme l1 {Human (Homo sapiens) [TaxId: 9606]}
mqlkpmeinpemlnkvlyrlgvagqwrfvdvlgleeeslgsvpapacallllfpltaqhe
nfrkkqieelkgqevspkvyfmkqtignscgtiglihavannqdklgfedgsvlkqflse
tekmspedrakcfekneaiqaahdavaqegqcrvddkvnfhfilfnnvdghlyeldgrmp
fpvnhgassedtllkdaakvcreftereqgevrfsavalckaa

Timeline for d4jkja_:

• d4jkja_ is new in SCOPe 2.04-stable
  
• d4jkja_ appears in SCOPe 2.05
  
• d4jkja_ appears in the current release, SCOPe 2.08