Lineage for Species: Zymomonas mobilis [TaxId: 542]

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2108258Fold c.36: Thiamin diphosphate-binding fold (THDP-binding) [52517] (1 superfamily)
    3 layers: a/b/a; parallel beta-sheet of 6 strands, order 213465
  4. 2108259Superfamily c.36.1: Thiamin diphosphate-binding fold (THDP-binding) [52518] (9 families) (S)
    there are two different functional modules of this fold: pyridine-binding (Pyr) and pyrophosphate-binding (PP) modules
    two Pyr and two PP modules assemble together in a conserved heterotetrameric core that binds two THDP coenzyme molecules
  5. 2108851Family c.36.1.0: automated matches [227300] (1 protein)
    not a true family
  6. 2108852Protein automated matches [227126] (20 species)
    not a true protein
  7. 2109146Species Zymomonas mobilis [TaxId:542] [255668] (6 PDB entries)

PDB entries in Species: Zymomonas mobilis [TaxId: 542]:

  1. Domain(s) for 2wva:
    1. 2109179Domain d2wvaa1: 2wva A:2-187 [244285]
      Other proteins in same PDB: d2wvaa2, d2wvab2, d2wvae2, d2wvaf2, d2wvav2, d2wvax2, d2wvay2, d2wvaz2
      automated match to d1zpda2
      complexed with mg, pyr, tpu
    2. 2109180Domain d2wvaa3: 2wva A:363-566 [244287]
      Other proteins in same PDB: d2wvaa2, d2wvab2, d2wvae2, d2wvaf2, d2wvav2, d2wvax2, d2wvay2, d2wvaz2
      automated match to d1zpda3
      complexed with mg, pyr, tpu
    3. 2109181Domain d2wvab1: 2wva B:2-187 [244288]
      Other proteins in same PDB: d2wvaa2, d2wvab2, d2wvae2, d2wvaf2, d2wvav2, d2wvax2, d2wvay2, d2wvaz2
      automated match to d1zpda2
      complexed with mg, pyr, tpu
    4. 2109182Domain d2wvab3: 2wva B:363-566 [244290]
      Other proteins in same PDB: d2wvaa2, d2wvab2, d2wvae2, d2wvaf2, d2wvav2, d2wvax2, d2wvay2, d2wvaz2
      automated match to d1zpda3
      complexed with mg, pyr, tpu
    5. 2109183Domain d2wvae1: 2wva E:2-187 [244291]
      Other proteins in same PDB: d2wvaa2, d2wvab2, d2wvae2, d2wvaf2, d2wvav2, d2wvax2, d2wvay2, d2wvaz2
      automated match to d1zpda2
      complexed with mg, pyr, tpu
    6. 2109184Domain d2wvae3: 2wva E:363-566 [244293]
      Other proteins in same PDB: d2wvaa2, d2wvab2, d2wvae2, d2wvaf2, d2wvav2, d2wvax2, d2wvay2, d2wvaz2
      automated match to d1zpda3
      complexed with mg, pyr, tpu
    7. 2109185Domain d2wvaf1: 2wva F:2-187 [244294]
      Other proteins in same PDB: d2wvaa2, d2wvab2, d2wvae2, d2wvaf2, d2wvav2, d2wvax2, d2wvay2, d2wvaz2
      automated match to d1zpda2
      complexed with mg, pyr, tpu
    8. 2109186Domain d2wvaf3: 2wva F:363-566 [244296]
      Other proteins in same PDB: d2wvaa2, d2wvab2, d2wvae2, d2wvaf2, d2wvav2, d2wvax2, d2wvay2, d2wvaz2
      automated match to d1zpda3
      complexed with mg, pyr, tpu
    9. 2109187Domain d2wvav1: 2wva V:2-187 [244297]
      Other proteins in same PDB: d2wvaa2, d2wvab2, d2wvae2, d2wvaf2, d2wvav2, d2wvax2, d2wvay2, d2wvaz2
      automated match to d1zpda2
      complexed with mg, pyr, tpu
    10. 2109188Domain d2wvav3: 2wva V:363-566 [244299]
      Other proteins in same PDB: d2wvaa2, d2wvab2, d2wvae2, d2wvaf2, d2wvav2, d2wvax2, d2wvay2, d2wvaz2
      automated match to d1zpda3
      complexed with mg, pyr, tpu
    11. 2109189Domain d2wvax1: 2wva X:1-187 [244300]
      Other proteins in same PDB: d2wvaa2, d2wvab2, d2wvae2, d2wvaf2, d2wvav2, d2wvax2, d2wvay2, d2wvaz2
      automated match to d1zpda2
      complexed with mg, pyr, tpu
    12. 2109190Domain d2wvax3: 2wva X:363-566 [244302]
      Other proteins in same PDB: d2wvaa2, d2wvab2, d2wvae2, d2wvaf2, d2wvav2, d2wvax2, d2wvay2, d2wvaz2
      automated match to d1zpda3
      complexed with mg, pyr, tpu
    13. 2109191Domain d2wvay1: 2wva Y:2-187 [244303]
      Other proteins in same PDB: d2wvaa2, d2wvab2, d2wvae2, d2wvaf2, d2wvav2, d2wvax2, d2wvay2, d2wvaz2
      automated match to d1zpda2
      complexed with mg, pyr, tpu
    14. 2109192Domain d2wvay3: 2wva Y:363-566 [244305]
      Other proteins in same PDB: d2wvaa2, d2wvab2, d2wvae2, d2wvaf2, d2wvav2, d2wvax2, d2wvay2, d2wvaz2
      automated match to d1zpda3
      complexed with mg, pyr, tpu
    15. 2109193Domain d2wvaz1: 2wva Z:2-187 [244306]
      Other proteins in same PDB: d2wvaa2, d2wvab2, d2wvae2, d2wvaf2, d2wvav2, d2wvax2, d2wvay2, d2wvaz2
      automated match to d1zpda2
      complexed with mg, pyr, tpu
    16. 2109194Domain d2wvaz3: 2wva Z:363-566 [244308]
      Other proteins in same PDB: d2wvaa2, d2wvab2, d2wvae2, d2wvaf2, d2wvav2, d2wvax2, d2wvay2, d2wvaz2
      automated match to d1zpda3
      complexed with mg, pyr, tpu
  2. Domain(s) for 2wvg:
    1. 2109147Domain d2wvga1: 2wvg A:2-187 [244313]
      Other proteins in same PDB: d2wvga2, d2wvgb2, d2wvge2, d2wvgf2
      automated match to d1zpda2
      complexed with f, mg, tpu
    2. 2109148Domain d2wvga3: 2wvg A:363-566 [244315]
      Other proteins in same PDB: d2wvga2, d2wvgb2, d2wvge2, d2wvgf2
      automated match to d1zpda3
      complexed with f, mg, tpu
    3. 2109149Domain d2wvgb1: 2wvg B:2-187 [244316]
      Other proteins in same PDB: d2wvga2, d2wvgb2, d2wvge2, d2wvgf2
      automated match to d1zpda2
      complexed with f, mg, tpu
    4. 2109150Domain d2wvgb3: 2wvg B:363-566 [244318]
      Other proteins in same PDB: d2wvga2, d2wvgb2, d2wvge2, d2wvgf2
      automated match to d1zpda3
      complexed with f, mg, tpu
    5. 2109151Domain d2wvge1: 2wvg E:2-187 [244319]
      Other proteins in same PDB: d2wvga2, d2wvgb2, d2wvge2, d2wvgf2
      automated match to d1zpda2
      complexed with f, mg, tpu
    6. 2109152Domain d2wvge3: 2wvg E:363-566 [244321]
      Other proteins in same PDB: d2wvga2, d2wvgb2, d2wvge2, d2wvgf2
      automated match to d1zpda3
      complexed with f, mg, tpu
    7. 2109153Domain d2wvgf1: 2wvg F:2-187 [244322]
      Other proteins in same PDB: d2wvga2, d2wvgb2, d2wvge2, d2wvgf2
      automated match to d1zpda2
      complexed with f, mg, tpu
    8. 2109154Domain d2wvgf3: 2wvg F:363-566 [244324]
      Other proteins in same PDB: d2wvga2, d2wvgb2, d2wvge2, d2wvgf2
      automated match to d1zpda3
      complexed with f, mg, tpu
  3. Domain(s) for 2wvh:
    1. 2109163Domain d2wvha1: 2wvh A:1-187 [244325]
      Other proteins in same PDB: d2wvha2, d2wvhb2, d2wvhe2, d2wvhf2, d2wvhv2, d2wvhx2, d2wvhy2, d2wvhz2
      automated match to d1zpda2
    2. 2109164Domain d2wvha3: 2wvh A:363-566 [244327]
      Other proteins in same PDB: d2wvha2, d2wvhb2, d2wvhe2, d2wvhf2, d2wvhv2, d2wvhx2, d2wvhy2, d2wvhz2
      automated match to d1zpda3
    3. 2109165Domain d2wvhb1: 2wvh B:2-187 [244328]
      Other proteins in same PDB: d2wvha2, d2wvhb2, d2wvhe2, d2wvhf2, d2wvhv2, d2wvhx2, d2wvhy2, d2wvhz2
      automated match to d1zpda2
    4. 2109166Domain d2wvhb3: 2wvh B:363-566 [244330]
      Other proteins in same PDB: d2wvha2, d2wvhb2, d2wvhe2, d2wvhf2, d2wvhv2, d2wvhx2, d2wvhy2, d2wvhz2
      automated match to d1zpda3
    5. 2109167Domain d2wvhe1: 2wvh E:2-187 [244331]
      Other proteins in same PDB: d2wvha2, d2wvhb2, d2wvhe2, d2wvhf2, d2wvhv2, d2wvhx2, d2wvhy2, d2wvhz2
      automated match to d1zpda2
    6. 2109168Domain d2wvhe3: 2wvh E:363-566 [244333]
      Other proteins in same PDB: d2wvha2, d2wvhb2, d2wvhe2, d2wvhf2, d2wvhv2, d2wvhx2, d2wvhy2, d2wvhz2
      automated match to d1zpda3
    7. 2109169Domain d2wvhf1: 2wvh F:2-187 [244334]
      Other proteins in same PDB: d2wvha2, d2wvhb2, d2wvhe2, d2wvhf2, d2wvhv2, d2wvhx2, d2wvhy2, d2wvhz2
      automated match to d1zpda2
    8. 2109170Domain d2wvhf3: 2wvh F:363-566 [244336]
      Other proteins in same PDB: d2wvha2, d2wvhb2, d2wvhe2, d2wvhf2, d2wvhv2, d2wvhx2, d2wvhy2, d2wvhz2
      automated match to d1zpda3
    9. 2109171Domain d2wvhv1: 2wvh V:2-187 [244337]
      Other proteins in same PDB: d2wvha2, d2wvhb2, d2wvhe2, d2wvhf2, d2wvhv2, d2wvhx2, d2wvhy2, d2wvhz2
      automated match to d1zpda2
    10. 2109172Domain d2wvhv3: 2wvh V:363-566 [244339]
      Other proteins in same PDB: d2wvha2, d2wvhb2, d2wvhe2, d2wvhf2, d2wvhv2, d2wvhx2, d2wvhy2, d2wvhz2
      automated match to d1zpda3
    11. 2109173Domain d2wvhx1: 2wvh X:2-187 [244340]
      Other proteins in same PDB: d2wvha2, d2wvhb2, d2wvhe2, d2wvhf2, d2wvhv2, d2wvhx2, d2wvhy2, d2wvhz2
      automated match to d1zpda2
    12. 2109174Domain d2wvhx3: 2wvh X:363-565 [244342]
      Other proteins in same PDB: d2wvha2, d2wvhb2, d2wvhe2, d2wvhf2, d2wvhv2, d2wvhx2, d2wvhy2, d2wvhz2
      automated match to d1zpda3
    13. 2109175Domain d2wvhy1: 2wvh Y:2-187 [244343]
      Other proteins in same PDB: d2wvha2, d2wvhb2, d2wvhe2, d2wvhf2, d2wvhv2, d2wvhx2, d2wvhy2, d2wvhz2
      automated match to d1zpda2
    14. 2109176Domain d2wvhy3: 2wvh Y:363-566 [244345]
      Other proteins in same PDB: d2wvha2, d2wvhb2, d2wvhe2, d2wvhf2, d2wvhv2, d2wvhx2, d2wvhy2, d2wvhz2
      automated match to d1zpda3
    15. 2109177Domain d2wvhz1: 2wvh Z:2-187 [244346]
      Other proteins in same PDB: d2wvha2, d2wvhb2, d2wvhe2, d2wvhf2, d2wvhv2, d2wvhx2, d2wvhy2, d2wvhz2
      automated match to d1zpda2
    16. 2109178Domain d2wvhz3: 2wvh Z:363-566 [244348]
      Other proteins in same PDB: d2wvha2, d2wvhb2, d2wvhe2, d2wvhf2, d2wvhv2, d2wvhx2, d2wvhy2, d2wvhz2
      automated match to d1zpda3
  4. Domain(s) for 3oe1:
    1. 2109155Domain d3oe1a1: 3oe1 A:2-187 [248166]
      Other proteins in same PDB: d3oe1a2, d3oe1b2, d3oe1c2, d3oe1d2
      automated match to d1zpda2
      complexed with gol, mg, tdl
    2. 2109156Domain d3oe1a3: 3oe1 A:363-566 [248168]
      Other proteins in same PDB: d3oe1a2, d3oe1b2, d3oe1c2, d3oe1d2
      automated match to d1zpda3
      complexed with gol, mg, tdl
    3. 2109157Domain d3oe1b1: 3oe1 B:2-187 [248169]
      Other proteins in same PDB: d3oe1a2, d3oe1b2, d3oe1c2, d3oe1d2
      automated match to d1zpda2
      complexed with gol, mg, tdl
    4. 2109158Domain d3oe1b3: 3oe1 B:363-566 [248171]
      Other proteins in same PDB: d3oe1a2, d3oe1b2, d3oe1c2, d3oe1d2
      automated match to d1zpda3
      complexed with gol, mg, tdl
    5. 2109159Domain d3oe1c1: 3oe1 C:2-187 [248172]
      Other proteins in same PDB: d3oe1a2, d3oe1b2, d3oe1c2, d3oe1d2
      automated match to d1zpda2
      complexed with gol, mg, tdl
    6. 2109160Domain d3oe1c3: 3oe1 C:363-566 [248174]
      Other proteins in same PDB: d3oe1a2, d3oe1b2, d3oe1c2, d3oe1d2
      automated match to d1zpda3
      complexed with gol, mg, tdl
    7. 2109161Domain d3oe1d1: 3oe1 D:2-187 [248175]
      Other proteins in same PDB: d3oe1a2, d3oe1b2, d3oe1c2, d3oe1d2
      automated match to d1zpda2
      complexed with gol, mg, tdl
    8. 2109162Domain d3oe1d3: 3oe1 D:363-566 [248177]
      Other proteins in same PDB: d3oe1a2, d3oe1b2, d3oe1c2, d3oe1d2
      automated match to d1zpda3
      complexed with gol, mg, tdl
  5. Domain(s) for 4zp1:
    1. 2109195Domain d4zp1a1: 4zp1 A:2-187 [279089]
      Other proteins in same PDB: d4zp1a2, d4zp1b2, d4zp1c2, d4zp1d2
      automated match to d1zpda2
      complexed with gol, mg, ni, tpp
    2. 2109196Domain d4zp1a3: 4zp1 A:363-566 [279091]
      Other proteins in same PDB: d4zp1a2, d4zp1b2, d4zp1c2, d4zp1d2
      automated match to d1zpda3
      complexed with gol, mg, ni, tpp
    3. 2109197Domain d4zp1b1: 4zp1 B:2-187 [279092]
      Other proteins in same PDB: d4zp1a2, d4zp1b2, d4zp1c2, d4zp1d2
      automated match to d1zpda2
      complexed with gol, mg, ni, tpp
    4. 2109198Domain d4zp1b3: 4zp1 B:363-566 [279094]
      Other proteins in same PDB: d4zp1a2, d4zp1b2, d4zp1c2, d4zp1d2
      automated match to d1zpda3
      complexed with gol, mg, ni, tpp
    5. 2109199Domain d4zp1c1: 4zp1 C:2-187 [279095]
      Other proteins in same PDB: d4zp1a2, d4zp1b2, d4zp1c2, d4zp1d2
      automated match to d1zpda2
      complexed with gol, mg, ni, tpp
    6. 2109200Domain d4zp1c3: 4zp1 C:363-566 [279097]
      Other proteins in same PDB: d4zp1a2, d4zp1b2, d4zp1c2, d4zp1d2
      automated match to d1zpda3
      complexed with gol, mg, ni, tpp
    7. 2109201Domain d4zp1d1: 4zp1 D:2-187 [279085]
      Other proteins in same PDB: d4zp1a2, d4zp1b2, d4zp1c2, d4zp1d2
      automated match to d1zpda2
      complexed with gol, mg, ni, tpp
    8. 2109202Domain d4zp1d3: 4zp1 D:363-566 [279088]
      Other proteins in same PDB: d4zp1a2, d4zp1b2, d4zp1c2, d4zp1d2
      automated match to d1zpda3
      complexed with gol, mg, ni, tpp
  6. Domain(s) for 5tma:
    1. 2297014Domain d5tmab1: 5tma B:1-187 [340315]
      Other proteins in same PDB: d5tmaa2, d5tmab2
      automated match to d1zpda2
      complexed with edo, mg, so4, tpp; mutant
    2. 2297016Domain d5tmab3: 5tma B:363-565 [340317]
      Other proteins in same PDB: d5tmaa2, d5tmab2
      automated match to d1zpda3
      complexed with edo, mg, so4, tpp; mutant
    3. 2297025Domain d5tmaa1: 5tma A:1-187 [340326]
      Other proteins in same PDB: d5tmaa2, d5tmab2
      automated match to d1zpda2
      complexed with edo, mg, so4, tpp; mutant
    4. 2297027Domain d5tmaa3: 5tma A:363-567 [340328]
      Other proteins in same PDB: d5tmaa2, d5tmab2
      automated match to d1zpda3
      complexed with edo, mg, so4, tpp; mutant

More info for Species Zymomonas mobilis [TaxId:542] from c.36.1.0 automated matches

Timeline for Species Zymomonas mobilis [TaxId:542] from c.36.1.0 automated matches: