Lineage for Species: Human (Homo sapiens) [TaxId: 9606]

  1. Root: SCOPe 2.08
  2. Class b: All beta proteins [48724] (180 folds)
  3. Fold b.82: Double-stranded beta-helix [51181] (7 superfamilies)
    one turn of helix is made by two pairs of antiparallel strands linked with short turns
    has appearance of a sandwich of distinct architecture and jelly-roll topology
  4. Superfamily b.82.2: Clavaminate synthase-like [51197] (16 families) (S)
    Iron and ketoglutarate-dependent enzymes; elaborated version of this common fold
  5. Family b.82.2.14: Jumonji domain / Histone demethylase core [254153] (7 proteins)
    Jumonji domain; Pfam PF02375 (JmjN) and Pfam PF02373 (JmjC); relationship to FIH1 (b.82.2.6) described in PubMed 16983801
    Pfam PF02375 (JmjN) and Pfam PF02373 (JmjC); relationship to FIH1 (b.82.2.6) described in PubMed 16983801; some members include C-terminal helical subdomain (Pfam PF17811)
  6. Protein automated matches [254635] (1 species)
    not a true protein
  7. Species Human (Homo sapiens) [TaxId:9606] [255633] (100 PDB entries)

PDB entries in Species: Human (Homo sapiens) [TaxId: 9606]:

  1. Domain(s) for 2w2i:
    1. Domain d2w2ia_: 2w2i A: [244010]
      automated match to d3dxua_
      complexed with gol, ni, pd2
    2. Domain d2w2ib_: 2w2i B: [244011]
      automated match to d3dxua_
      complexed with gol, ni, pd2
    3. Domain d2w2ic_: 2w2i C: [244012]
      automated match to d3dxua_
      complexed with gol, ni, pd2
  2. Domain(s) for 2xml:
    1. Domain d2xmla_: 2xml A: [244538]
      automated match to d2gp5a_
      complexed with cl, edo, ni, oga, zn
    2. Domain d2xmlb_: 2xml B: [244539]
      automated match to d2gp5a_
      complexed with cl, edo, ni, oga, zn
  3. Domain(s) for 3dxt:
  4. Domain(s) for 3k3n:
  5. Domain(s) for 3k3o:
  6. Domain(s) for 3kv9:
  7. Domain(s) for 3kva:
  8. Domain(s) for 3kvb:
  9. Domain(s) for 3ptr:
  10. Domain(s) for 3pu3:
    1. Domain d3pu3a_: 3pu3 A: [413348]
      automated match to d2wwua_
      complexed with edo, gol, oga
    2. Domain d3pu3b_: 3pu3 B: [413349]
      automated match to d2wwua_
      complexed with edo, gol, oga
  11. Domain(s) for 3pu8:
    1. Domain d3pu8b_: 3pu8 B: [413351]
      automated match to d2wwua_
      complexed with cl, edo, fe, oga, oxy, so4
    2. Domain d3pu8a_: 3pu8 A: [413350]
      automated match to d2wwua_
      complexed with cl, edo, fe, oga, oxy, so4
  12. Domain(s) for 3pua:
  13. Domain(s) for 3pus:
    1. Domain d3pusb_: 3pus B: [413358]
      automated match to d2wwua_
      complexed with cl, edo, ni, oga, oxy
    2. Domain d3pusa_: 3pus A: [413357]
      automated match to d2wwua_
      complexed with cl, edo, ni, oga, oxy
  14. Domain(s) for 3u78:
  15. Domain(s) for 4d6q:
  16. Domain(s) for 4d6r:
  17. Domain(s) for 4d6s:
  18. Domain(s) for 4do0:
  19. Domain(s) for 4xdo:
    1. Domain d4xdoa_: 4xdo A: [270828]
      automated match to d2xmla_
      complexed with edo, fe, oga, pg4, pge, zn
    2. Domain d4xdob_: 4xdo B: [270829]
      automated match to d2xmla_
      complexed with edo, fe, oga, pg4, pge, zn
  20. Domain(s) for 4xdp:
    1. Domain d4xdpa_: 4xdp A: [270830]
      automated match to d2xmla_
      complexed with cl, edo, fe, pg4, pge, trs, zn
    2. Domain d4xdpb_: 4xdp B: [270827]
      automated match to d2xmla_
      complexed with cl, edo, fe, pg4, pge, trs, zn
  21. Domain(s) for 5a3n:
  22. Domain(s) for 5a3p:
  23. Domain(s) for 5a3t:
  24. Domain(s) for 5a3w:
  25. Domain(s) for 5a7o:
    1. Domain d5a7oa_: 5a7o A: [280220]
      automated match to d4v2wb_
      complexed with 7wh, dms, edo, mn, so4, zn
    2. Domain d5a7ob_: 5a7o B: [280219]
      automated match to d4v2wb_
      complexed with 7wh, dms, edo, mn, so4, zn
  26. Domain(s) for 5a7w:
  27. Domain(s) for 5fjh:
    1. Domain d5fjha_: 5fjh A: [278373]
      automated match to d2xmla_
      complexed with cl, edo, mmk, ni, zn
    2. Domain d5fjhb_: 5fjh B: [278372]
      automated match to d2xmla_
      complexed with cl, edo, mmk, ni, zn
  28. Domain(s) for 5fjk:
  29. Domain(s) for 5fpl:
  30. Domain(s) for 5fpu:
  31. Domain(s) for 5fun:
  32. Domain(s) for 5fup:
  33. Domain(s) for 5fv3:
  34. Domain(s) for 5fwj:
    1. Domain d5fwja1: 5fwj A:8-637 [414735]
      Other proteins in same PDB: d5fwja2, d5fwja3, d5fwjb2, d5fwjb3
      automated match to d5a1fa1
      complexed with mg, mmk, mn, zn
    2. Domain d5fwjb1: 5fwj B:8-637 [414738]
      Other proteins in same PDB: d5fwja2, d5fwja3, d5fwjb2, d5fwjb3
      automated match to d5a1fa1
      complexed with mg, mmk, mn, zn
  35. Domain(s) for 5fy4:
  36. Domain(s) for 5fy5:
  37. Domain(s) for 5fy9:
  38. Domain(s) for 5fyb:
  39. Domain(s) for 5fys:
  40. Domain(s) for 5fyt:
  41. Domain(s) for 5fyu:
  42. Domain(s) for 5fyv:
  43. Domain(s) for 5fyy:
  44. Domain(s) for 5fyz:
  45. Domain(s) for 5fz0:
  46. Domain(s) for 5fz1:
  47. Domain(s) for 5fz3:
  48. Domain(s) for 5fz4:
  49. Domain(s) for 5fz6:
  50. Domain(s) for 5fz7:
  51. Domain(s) for 5fz8:
  52. Domain(s) for 5fz9:
  53. Domain(s) for 5fza:
  54. Domain(s) for 5fzb:
  55. Domain(s) for 5fzc:
  56. Domain(s) for 5fzd:
  57. Domain(s) for 5fze:
  58. Domain(s) for 5fzf:
  59. Domain(s) for 5fzg:
  60. Domain(s) for 5fzh:
  61. Domain(s) for 5fzi:
  62. Domain(s) for 5fzk:
  63. Domain(s) for 5fzl:
  64. Domain(s) for 5fzm:
  65. Domain(s) for 5kr7:
    1. Domain d5kr7a_: 5kr7 A: [321441]
      automated match to d5f37b_
      complexed with 6x9, cl, fe2, zn
    2. Domain d5kr7b_: 5kr7 B: [321451]
      automated match to d5f37b_
      complexed with 6x9, cl, fe2, zn
  66. Domain(s) for 5r7x:
    1. Domain d5r7xa1: 5r7x A:1380-1717 [384065]
      Other proteins in same PDB: d5r7xa2, d5r7xb2
      automated match to d4c8da_
      complexed with cl, mn
    2. Domain d5r7xb1: 5r7x B:1380-1725 [384175]
      Other proteins in same PDB: d5r7xa2, d5r7xb2
      automated match to d4c8da_
      complexed with cl, mn
  67. Domain(s) for 5raa:
    1. Domain d5raaa1: 5raa A:1380-1717 [384250]
      Other proteins in same PDB: d5raaa2, d5raab2
      automated match to d4c8da_
      complexed with cl, mn, s3y
    2. Domain d5raab1: 5raa B:1380-1725 [384384]
      Other proteins in same PDB: d5raaa2, d5raab2
      automated match to d4c8da_
      complexed with cl, mn, s3y
  68. Domain(s) for 5rab:
    1. Domain d5raba1: 5rab A:1380-1717 [384308]
      Other proteins in same PDB: d5raba2, d5rabb2
      automated match to d4c8da_
      complexed with cl, mn, s4y
    2. Domain d5rabb1: 5rab B:1380-1725 [384274]
      Other proteins in same PDB: d5raba2, d5rabb2
      automated match to d4c8da_
      complexed with cl, mn, s4y
  69. Domain(s) for 5rac:
    1. Domain d5raca1: 5rac A:1380-1717 [384342]
      Other proteins in same PDB: d5raca2, d5racb2
      automated match to d4c8da_
      complexed with cl, mn, o3m
    2. Domain d5racb1: 5rac B:1380-1725 [384240]
      Other proteins in same PDB: d5raca2, d5racb2
      automated match to d4c8da_
      complexed with cl, mn, o3m
  70. Domain(s) for 5rad:
    1. Domain d5rada1: 5rad A:1380-1717 [384245]
      Other proteins in same PDB: d5rada2, d5radb2
      automated match to d4c8da_
      complexed with ayj, cl, mn
    2. Domain d5radb1: 5rad B:1380-1725 [384375]
      Other proteins in same PDB: d5rada2, d5radb2
      automated match to d4c8da_
      complexed with ayj, cl, mn
  71. Domain(s) for 5rae:
    1. Domain d5raea1: 5rae A:1380-1717 [384294]
      Other proteins in same PDB: d5raea2, d5raeb2
      automated match to d4c8da_
      complexed with cl, mn, s5a
    2. Domain d5raeb1: 5rae B:1380-1725 [384204]
      Other proteins in same PDB: d5raea2, d5raeb2
      automated match to d4c8da_
      complexed with cl, mn, s5a
  72. Domain(s) for 5raf:
    1. Domain d5rafa1: 5raf A:1380-1717 [384391]
      Other proteins in same PDB: d5rafa2, d5rafb2
      automated match to d4c8da_
      complexed with cl, mn, s5g
    2. Domain d5rafb1: 5raf B:1380-1725 [384355]
      Other proteins in same PDB: d5rafa2, d5rafb2
      automated match to d4c8da_
      complexed with cl, mn, s5g
  73. Domain(s) for 5rag:
    1. Domain d5raga1: 5rag A:1380-1717 [384153]
      Other proteins in same PDB: d5raga2, d5ragb2
      automated match to d4c8da_
      complexed with cl, mn, o3g
    2. Domain d5ragb1: 5rag B:1380-1725 [384351]
      Other proteins in same PDB: d5raga2, d5ragb2
      automated match to d4c8da_
      complexed with cl, mn, o3g
  74. Domain(s) for 5rah:
    1. Domain d5raha1: 5rah A:1380-1717 [384367]
      Other proteins in same PDB: d5raha2, d5rahb2
      automated match to d4c8da_
      complexed with cl, gx4, mn
    2. Domain d5rahb1: 5rah B:1380-1725 [384407]
      Other proteins in same PDB: d5raha2, d5rahb2
      automated match to d4c8da_
      complexed with cl, gx4, mn
  75. Domain(s) for 5rai:
    1. Domain d5raia1: 5rai A:1380-1717 [384387]
      Other proteins in same PDB: d5raia2, d5raib2
      automated match to d4c8da_
      complexed with cl, mn, s3m
    2. Domain d5raib1: 5rai B:1380-1725 [384347]
      Other proteins in same PDB: d5raia2, d5raib2
      automated match to d4c8da_
      complexed with cl, mn, s3m
  76. Domain(s) for 5raj:
    1. Domain d5raja1: 5raj A:1380-1717 [384121]
      Other proteins in same PDB: d5raja2, d5rajb2
      automated match to d4c8da_
      complexed with cl, mn, w77
    2. Domain d5rajb1: 5raj B:1380-1725 [384378]
      Other proteins in same PDB: d5raja2, d5rajb2
      automated match to d4c8da_
      complexed with cl, mn, w77
  77. Domain(s) for 5rak:
    1. Domain d5raka1: 5rak A:1380-1717 [384306]
      Other proteins in same PDB: d5raka2, d5rakb2
      automated match to d4c8da_
      complexed with cl, mn, n6y
    2. Domain d5rakb1: 5rak B:1380-1725 [384173]
      Other proteins in same PDB: d5raka2, d5rakb2
      automated match to d4c8da_
      complexed with cl, mn, n6y
  78. Domain(s) for 5ral:
    1. Domain d5rala1: 5ral A:1380-1717 [384108]
      Other proteins in same PDB: d5rala2, d5ralb2
      automated match to d4c8da_
      complexed with cl, mn, snq
    2. Domain d5ralb1: 5ral B:1380-1725 [384287]
      Other proteins in same PDB: d5rala2, d5ralb2
      automated match to d4c8da_
      complexed with cl, mn, snq
  79. Domain(s) for 5ram:
    1. Domain d5rama1: 5ram A:1380-1717 [384170]
      Other proteins in same PDB: d5rama2, d5ramb2
      automated match to d4c8da_
      complexed with cl, mn, s3v
    2. Domain d5ramb1: 5ram B:1380-1725 [384358]
      Other proteins in same PDB: d5rama2, d5ramb2
      automated match to d4c8da_
      complexed with cl, mn, s3v
  80. Domain(s) for 5ran:
    1. Domain d5rana1: 5ran A:1380-1717 [384310]
      Other proteins in same PDB: d5rana2, d5ranb2
      automated match to d4c8da_
      complexed with cl, mn, ryp
    2. Domain d5ranb1: 5ran B:1380-1725 [384215]
      Other proteins in same PDB: d5rana2, d5ranb2
      automated match to d4c8da_
      complexed with cl, mn, ryp
  81. Domain(s) for 5rao:
    1. Domain d5raoa1: 5rao A:1380-1717 [384164]
      Other proteins in same PDB: d5raoa2, d5raob2
      automated match to d4c8da_
      complexed with cl, mn, s3s
    2. Domain d5raob1: 5rao B:1380-1725 [384369]
      Other proteins in same PDB: d5raoa2, d5raob2
      automated match to d4c8da_
      complexed with cl, mn, s3s
  82. Domain(s) for 5rap:
    1. Domain d5rapa1: 5rap A:1380-1717 [384395]
      Other proteins in same PDB: d5rapa2, d5rapb2
      automated match to d4c8da_
      complexed with cl, mn, s64
    2. Domain d5rapb1: 5rap B:1380-1725 [384124]
      Other proteins in same PDB: d5rapa2, d5rapb2
      automated match to d4c8da_
      complexed with cl, mn, s64
  83. Domain(s) for 5raq:
    1. Domain d5raqa1: 5raq A:1380-1717 [384289]
      Other proteins in same PDB: d5raqa2, d5raqb2
      automated match to d4c8da_
      complexed with cl, mn, s5j
    2. Domain d5raqb1: 5raq B:1380-1725 [384371]
      Other proteins in same PDB: d5raqa2, d5raqb2
      automated match to d4c8da_
      complexed with cl, mn, s5j
  84. Domain(s) for 5rar:
    1. Domain d5rara1: 5rar A:1380-1717 [384102]
      Other proteins in same PDB: d5rara2, d5rarb2
      automated match to d4c8da_
      complexed with cl, mn, s9d
    2. Domain d5rarb1: 5rar B:1380-1725 [384098]
      Other proteins in same PDB: d5rara2, d5rarb2
      automated match to d4c8da_
      complexed with cl, mn, s9d
  85. Domain(s) for 5ras:
    1. Domain d5rasa1: 5ras A:1380-1717 [384393]
      Other proteins in same PDB: d5rasa2, d5rasb2
      automated match to d4c8da_
      complexed with cl, mn, s3j
    2. Domain d5rasb1: 5ras B:1380-1725 [384353]
      Other proteins in same PDB: d5rasa2, d5rasb2
      automated match to d4c8da_
      complexed with cl, mn, s3j
  86. Domain(s) for 5rau:
    1. Domain d5raua1: 5rau A:1380-1717 [384155]
      Other proteins in same PDB: d5raua2, d5raub2
      automated match to d4c8da_
      complexed with cl, hge, mn
    2. Domain d5raub1: 5rau B:1380-1725 [384280]
      Other proteins in same PDB: d5raua2, d5raub2
      automated match to d4c8da_
      complexed with cl, hge, mn
  87. Domain(s) for 5rav:
    1. Domain d5rava1: 5rav A:1380-1717 [384107]
      Other proteins in same PDB: d5rava2, d5ravb2
      automated match to d4c8da_
      complexed with cl, mn, s9g
    2. Domain d5ravb1: 5rav B:1380-1725 [384218]
      Other proteins in same PDB: d5rava2, d5ravb2
      automated match to d4c8da_
      complexed with cl, mn, s9g
  88. Domain(s) for 5raw:
    1. Domain d5rawa1: 5raw A:1380-1717 [384100]
      Other proteins in same PDB: d5rawa2, d5rawb2
      automated match to d4c8da_
      complexed with cl, jj7, mn
    2. Domain d5rawb1: 5raw B:1380-1725 [384247]
      Other proteins in same PDB: d5rawa2, d5rawb2
      automated match to d4c8da_
      complexed with cl, jj7, mn
  89. Domain(s) for 5rax:
    1. Domain d5raxa1: 5rax A:1380-1717 [384209]
      Other proteins in same PDB: d5raxa2, d5raxb2
      automated match to d4c8da_
      complexed with cl, mn, s9j
    2. Domain d5raxb1: 5rax B:1380-1725 [384141]
      Other proteins in same PDB: d5raxa2, d5raxb2
      automated match to d4c8da_
      complexed with cl, mn, s9j
  90. Domain(s) for 5ray:
    1. Domain d5raya1: 5ray A:1380-1717 [384324]
      Other proteins in same PDB: d5raya2, d5rayb2
      automated match to d4c8da_
      complexed with cl, mn, s9m
    2. Domain d5rayb1: 5ray B:1380-1725 [384193]
      Other proteins in same PDB: d5raya2, d5rayb2
      automated match to d4c8da_
      complexed with cl, mn, s9m
  91. Domain(s) for 5raz:
    1. Domain d5raza1: 5raz A:1380-1717 [384403]
      Other proteins in same PDB: d5raza2, d5razb2
      automated match to d4c8da_
      complexed with cl, k0g, mn
    2. Domain d5razb1: 5raz B:1380-1725 [384262]
      Other proteins in same PDB: d5raza2, d5razb2
      automated match to d4c8da_
      complexed with cl, k0g, mn
  92. Domain(s) for 5rb0:
    1. Domain d5rb0a1: 5rb0 A:1380-1717 [384233]
      Other proteins in same PDB: d5rb0a2, d5rb0b2
      automated match to d4c8da_
      complexed with cl, gwa, mn
    2. Domain d5rb0b1: 5rb0 B:1380-1725 [384364]
      Other proteins in same PDB: d5rb0a2, d5rb0b2
      automated match to d4c8da_
      complexed with cl, gwa, mn
  93. Domain(s) for 5rb1:
    1. Domain d5rb1a1: 5rb1 A:1380-1717 [384276]
      Other proteins in same PDB: d5rb1a2, d5rb1b2
      automated match to d4c8da_
      complexed with cl, mn, s4v
    2. Domain d5rb1b1: 5rb1 B:1380-1725 [384228]
      Other proteins in same PDB: d5rb1a2, d5rb1b2
      automated match to d4c8da_
      complexed with cl, mn, s4v
  94. Domain(s) for 5rb2:
    1. Domain d5rb2a1: 5rb2 A:1380-1717 [384302]
      Other proteins in same PDB: d5rb2a2, d5rb2b2
      automated match to d4c8da_
      complexed with cl, mn, s9p
    2. Domain d5rb2b1: 5rb2 B:1380-1725 [384401]
      Other proteins in same PDB: d5rb2a2, d5rb2b2
      automated match to d4c8da_
      complexed with cl, mn, s9p
  95. Domain(s) for 5rb3:
    1. Domain d5rb3a1: 5rb3 A:1380-1717 [384191]
      Other proteins in same PDB: d5rb3a2, d5rb3b2
      automated match to d4c8da_
      complexed with cl, mn, mpv
    2. Domain d5rb3b1: 5rb3 B:1380-1725 [384235]
      Other proteins in same PDB: d5rb3a2, d5rb3b2
      automated match to d4c8da_
      complexed with cl, mn, mpv
  96. Domain(s) for 5rb4:
    1. Domain d5rb4a1: 5rb4 A:1380-1717 [384389]
      Other proteins in same PDB: d5rb4a2, d5rb4b2
      automated match to d4c8da_
      complexed with a6z, cl, mn
    2. Domain d5rb4b1: 5rb4 B:1380-1725 [384178]
      Other proteins in same PDB: d5rb4a2, d5rb4b2
      automated match to d4c8da_
      complexed with a6z, cl, mn
  97. Domain(s) for 5rb5:
    1. Domain d5rb5a1: 5rb5 A:1380-1717 [384382]
      Other proteins in same PDB: d5rb5a2, d5rb5b2
      automated match to d4c8da_
      complexed with cl, mn, s9s
    2. Domain d5rb5b1: 5rb5 B:1380-1725 [384268]
      Other proteins in same PDB: d5rb5a2, d5rb5b2
      automated match to d4c8da_
      complexed with cl, mn, s9s
  98. Domain(s) for 5rb6:
    1. Domain d5rb6a1: 5rb6 A:1380-1717 [384379]
      Other proteins in same PDB: d5rb6a2, d5rb6b2
      automated match to d4c8da_
      complexed with cl, mn, s9v
    2. Domain d5rb6b1: 5rb6 B:1380-1725 [384140]
      Other proteins in same PDB: d5rb6a2, d5rb6b2
      automated match to d4c8da_
      complexed with cl, mn, s9v
  99. Domain(s) for 5rb7:
    1. Domain d5rb7a1: 5rb7 A:1380-1717 [384360]
      Other proteins in same PDB: d5rb7a2, d5rb7b2
      automated match to d4c8da_
      complexed with cl, mn, s4d
    2. Domain d5rb7b1: 5rb7 B:1380-1725 [384559]
      Other proteins in same PDB: d5rb7a2, d5rb7b2
      automated match to d4c8da_
      complexed with cl, mn, s4d
  100. Domain(s) for 6rbj:
    1. Domain d6rbja1: 6rbj A:1380-1717 [385541]
      Other proteins in same PDB: d6rbja2
      automated match to d4c8da_
      complexed with cl, edo, jx8, mn
    2. Domain d6rbjb_: 6rbj B: [385549]
      Other proteins in same PDB: d6rbja2
      automated match to d4c8da_
      complexed with cl, edo, jx8, mn

More info for Species Human (Homo sapiens) [TaxId:9606] from b.82.2.14 automated matches

Timeline for Species Human (Homo sapiens) [TaxId:9606] from b.82.2.14 automated matches: