Lineage for Species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2108258Fold c.36: Thiamin diphosphate-binding fold (THDP-binding) [52517] (1 superfamily)
    3 layers: a/b/a; parallel beta-sheet of 6 strands, order 213465
  4. 2108259Superfamily c.36.1: Thiamin diphosphate-binding fold (THDP-binding) [52518] (9 families) (S)
    there are two different functional modules of this fold: pyridine-binding (Pyr) and pyrophosphate-binding (PP) modules
    two Pyr and two PP modules assemble together in a conserved heterotetrameric core that binds two THDP coenzyme molecules
  5. 2108851Family c.36.1.0: automated matches [227300] (1 protein)
    not a true family
  6. 2108852Protein automated matches [227126] (20 species)
    not a true protein
  7. 2108884Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [255615] (4 PDB entries)

PDB entries in Species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]:

  1. Domain(s) for 1ypd:
    1. 2108909Domain d1ypda1: 1ypd A:2-181 [303404]
      Other proteins in same PDB: d1ypda2, d1ypdb2
      automated match to d2vk1a1
      complexed with mg, tpp
    2. 2108910Domain d1ypda3: 1ypd A:361-556 [303406]
      Other proteins in same PDB: d1ypda2, d1ypdb2
      automated match to d2vk1a3
      complexed with mg, tpp
    3. 2108911Domain d1ypdb1: 1ypd B:2-181 [303407]
      Other proteins in same PDB: d1ypda2, d1ypdb2
      automated match to d2vk1a1
      complexed with mg, tpp
    4. 2108912Domain d1ypdb3: 1ypd B:361-556 [303409]
      Other proteins in same PDB: d1ypda2, d1ypdb2
      automated match to d2vk1a3
      complexed with mg, tpp
  2. Domain(s) for 2vk1:
    1. 2108893Domain d2vk1a1: 2vk1 A:2-181 [243882]
      Other proteins in same PDB: d2vk1a2, d2vk1b2, d2vk1c2, d2vk1d2
      automated match to d1qpba2
      complexed with mg, pyr, tpp
    2. 2108894Domain d2vk1a3: 2vk1 A:361-563 [243884]
      Other proteins in same PDB: d2vk1a2, d2vk1b2, d2vk1c2, d2vk1d2
      automated match to d1qpba3
      complexed with mg, pyr, tpp
    3. 2108895Domain d2vk1b1: 2vk1 B:2-181 [243885]
      Other proteins in same PDB: d2vk1a2, d2vk1b2, d2vk1c2, d2vk1d2
      automated match to d1qpba2
      complexed with mg, pyr, tpp
    4. 2108896Domain d2vk1b3: 2vk1 B:361-563 [243887]
      Other proteins in same PDB: d2vk1a2, d2vk1b2, d2vk1c2, d2vk1d2
      automated match to d1qpba3
      complexed with mg, pyr, tpp
    5. 2108897Domain d2vk1c1: 2vk1 C:2-181 [243888]
      Other proteins in same PDB: d2vk1a2, d2vk1b2, d2vk1c2, d2vk1d2
      automated match to d1qpba2
      complexed with mg, pyr, tpp
    6. 2108898Domain d2vk1c3: 2vk1 C:361-563 [243890]
      Other proteins in same PDB: d2vk1a2, d2vk1b2, d2vk1c2, d2vk1d2
      automated match to d1qpba3
      complexed with mg, pyr, tpp
    7. 2108899Domain d2vk1d1: 2vk1 D:2-181 [243891]
      Other proteins in same PDB: d2vk1a2, d2vk1b2, d2vk1c2, d2vk1d2
      automated match to d1qpba2
      complexed with mg, pyr, tpp
    8. 2108900Domain d2vk1d3: 2vk1 D:361-563 [243893]
      Other proteins in same PDB: d2vk1a2, d2vk1b2, d2vk1c2, d2vk1d2
      automated match to d1qpba3
      complexed with mg, pyr, tpp
  3. Domain(s) for 2vk8:
    1. 2108885Domain d2vk8a1: 2vk8 A:2-181 [243906]
      Other proteins in same PDB: d2vk8a2, d2vk8b2, d2vk8c2, d2vk8d2
      automated match to d1qpba2
      complexed with 2op, mg, tpp
    2. 2108886Domain d2vk8a3: 2vk8 A:361-563 [243908]
      Other proteins in same PDB: d2vk8a2, d2vk8b2, d2vk8c2, d2vk8d2
      automated match to d1qpba3
      complexed with 2op, mg, tpp
    3. 2108887Domain d2vk8b1: 2vk8 B:2-181 [243909]
      Other proteins in same PDB: d2vk8a2, d2vk8b2, d2vk8c2, d2vk8d2
      automated match to d1qpba2
      complexed with 2op, mg, tpp
    4. 2108888Domain d2vk8b3: 2vk8 B:361-563 [243911]
      Other proteins in same PDB: d2vk8a2, d2vk8b2, d2vk8c2, d2vk8d2
      automated match to d1qpba3
      complexed with 2op, mg, tpp
    5. 2108889Domain d2vk8c1: 2vk8 C:2-181 [243912]
      Other proteins in same PDB: d2vk8a2, d2vk8b2, d2vk8c2, d2vk8d2
      automated match to d1qpba2
      complexed with 2op, mg, tpp
    6. 2108890Domain d2vk8c3: 2vk8 C:361-563 [243914]
      Other proteins in same PDB: d2vk8a2, d2vk8b2, d2vk8c2, d2vk8d2
      automated match to d1qpba3
      complexed with 2op, mg, tpp
    7. 2108891Domain d2vk8d1: 2vk8 D:2-181 [243915]
      Other proteins in same PDB: d2vk8a2, d2vk8b2, d2vk8c2, d2vk8d2
      automated match to d1qpba2
      complexed with 2op, mg, tpp
    8. 2108892Domain d2vk8d3: 2vk8 D:361-563 [243917]
      Other proteins in same PDB: d2vk8a2, d2vk8b2, d2vk8c2, d2vk8d2
      automated match to d1qpba3
      complexed with 2op, mg, tpp
  4. Domain(s) for 2w93:
    1. 2108901Domain d2w93a1: 2w93 A:2-181 [244051]
      Other proteins in same PDB: d2w93a2, d2w93b2, d2w93c2, d2w93d2
      automated match to d1qpba2
      complexed with mg, py0, tpp
    2. 2108902Domain d2w93a3: 2w93 A:361-559 [244053]
      Other proteins in same PDB: d2w93a2, d2w93b2, d2w93c2, d2w93d2
      automated match to d1qpba3
      complexed with mg, py0, tpp
    3. 2108903Domain d2w93b1: 2w93 B:2-181 [244054]
      Other proteins in same PDB: d2w93a2, d2w93b2, d2w93c2, d2w93d2
      automated match to d1qpba2
      complexed with mg, py0, tpp
    4. 2108904Domain d2w93b3: 2w93 B:361-563 [244056]
      Other proteins in same PDB: d2w93a2, d2w93b2, d2w93c2, d2w93d2
      automated match to d1qpba3
      complexed with mg, py0, tpp
    5. 2108905Domain d2w93c1: 2w93 C:2-181 [244057]
      Other proteins in same PDB: d2w93a2, d2w93b2, d2w93c2, d2w93d2
      automated match to d1qpba2
      complexed with mg, py0, tpp
    6. 2108906Domain d2w93c3: 2w93 C:361-558 [244059]
      Other proteins in same PDB: d2w93a2, d2w93b2, d2w93c2, d2w93d2
      automated match to d1qpba3
      complexed with mg, py0, tpp
    7. 2108907Domain d2w93d1: 2w93 D:2-181 [244060]
      Other proteins in same PDB: d2w93a2, d2w93b2, d2w93c2, d2w93d2
      automated match to d1qpba2
      complexed with mg, py0, tpp
    8. 2108908Domain d2w93d3: 2w93 D:361-563 [244062]
      Other proteins in same PDB: d2w93a2, d2w93b2, d2w93c2, d2w93d2
      automated match to d1qpba3
      complexed with mg, py0, tpp

More info for Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] from c.36.1.0 automated matches

Timeline for Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] from c.36.1.0 automated matches: