SCOPe 2.04: Species: Lactobacillus plantarum [TaxId: 1590]

Lineage for Species: Lactobacillus plantarum [TaxId: 1590]

Root: SCOPe 2.04
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
Fold c.36: Thiamin diphosphate-binding fold (THDP-binding) [52517] (1 superfamily)
3 layers: a/b/a; parallel beta-sheet of 6 strands, order 213465

Superfamily c.36.1: Thiamin diphosphate-binding fold (THDP-binding) [52518] (9 families)

(S)

there are two different functional modules of this fold: pyridine-binding (Pyr) and pyrophosphate-binding (PP) modules
two Pyr and two PP modules assemble together in a conserved heterotetrameric core that binds two THDP coenzyme molecules

Family c.36.1.0: automated matches [227300] (1 protein)
not a true family
Protein automated matches [227126] (15 species)
not a true protein
Species Lactobacillus plantarum [TaxId:1590] [254973] (6 PDB entries)

PDB entries in Species: Lactobacillus plantarum [TaxId: 1590]:

Domain(s) for 1y9d:
1. Domain d1y9da1: 1y9d A:9-182 [240982]
  Other proteins in same PDB: d1y9da2, d1y9db2, d1y9dc2, d1y9dd2
  automated match to d2ez9a2
  complexed with fad, mg, na, so4, tpp
2. Domain d1y9da3: 1y9d A:366-593 [240984]
  Other proteins in same PDB: d1y9da2, d1y9db2, d1y9dc2, d1y9dd2
  automated match to d1powa3
  complexed with fad, mg, na, so4, tpp
3. Domain d1y9db1: 1y9d B:9-182 [240985]
  Other proteins in same PDB: d1y9da2, d1y9db2, d1y9dc2, d1y9dd2
  automated match to d2ez9a2
  complexed with fad, mg, na, so4, tpp
4. Domain d1y9db3: 1y9d B:366-597 [240987]
  Other proteins in same PDB: d1y9da2, d1y9db2, d1y9dc2, d1y9dd2
  automated match to d1powa3
  complexed with fad, mg, na, so4, tpp
5. Domain d1y9dc1: 1y9d C:9-180 [240988]
  Other proteins in same PDB: d1y9da2, d1y9db2, d1y9dc2, d1y9dd2
  automated match to d2ez9a2
  complexed with fad, mg, na, so4, tpp
6. Domain d1y9dc3: 1y9d C:366-593 [240990]
  Other proteins in same PDB: d1y9da2, d1y9db2, d1y9dc2, d1y9dd2
  automated match to d1powa3
  complexed with fad, mg, na, so4, tpp
7. Domain d1y9dd1: 1y9d D:9-182 [240991]
  Other proteins in same PDB: d1y9da2, d1y9db2, d1y9dc2, d1y9dd2
  automated match to d2ez9a2
  complexed with fad, mg, na, so4, tpp
8. Domain d1y9dd3: 1y9d D:366-593 [240993]
  Other proteins in same PDB: d1y9da2, d1y9db2, d1y9dc2, d1y9dd2
  automated match to d1powa3
  complexed with fad, mg, na, so4, tpp
Domain(s) for 2ez4:
1. Domain d2ez4a2: 2ez4 A:9-182 [132611]
  Other proteins in same PDB: d2ez4a1, d2ez4b1
  automated match to d2ez9a2
  complexed with fad, mg, na, po4, tpp
2. Domain d2ez4a3: 2ez4 A:366-593 [132612]
  Other proteins in same PDB: d2ez4a1, d2ez4b1
  automated match to d1powa3
  complexed with fad, mg, na, po4, tpp
3. Domain d2ez4b2: 2ez4 B:9-182 [132614]
  Other proteins in same PDB: d2ez4a1, d2ez4b1
  automated match to d2ez9a2
  complexed with fad, mg, na, po4, tpp
4. Domain d2ez4b3: 2ez4 B:366-593 [132615]
  Other proteins in same PDB: d2ez4a1, d2ez4b1
  automated match to d1powa3
  complexed with fad, mg, na, po4, tpp
Domain(s) for 2ez8:
1. Domain d2ez8a2: 2ez8 A:9-182 [132622]
  Other proteins in same PDB: d2ez8a1, d2ez8b1
  automated match to d2ez9a2
  complexed with fad, mg, na, pyr, tdl
2. Domain d2ez8a3: 2ez8 A:366-593 [132623]
  Other proteins in same PDB: d2ez8a1, d2ez8b1
  automated match to d1powa3
  complexed with fad, mg, na, pyr, tdl
3. Domain d2ez8b2: 2ez8 B:9-182 [132625]
  Other proteins in same PDB: d2ez8a1, d2ez8b1
  automated match to d2ez9a2
  complexed with fad, mg, na, pyr, tdl
4. Domain d2ez8b3: 2ez8 B:366-593 [132626]
  Other proteins in same PDB: d2ez8a1, d2ez8b1
  automated match to d1powa3
  complexed with fad, mg, na, pyr, tdl
Domain(s) for 2ez9:
1. Domain d2ez9a2: 2ez9 A:9-182 [132628]
  Other proteins in same PDB: d2ez9a1, d2ez9b1
  automated match to d2ez9a2
  complexed with fad, mg, na, tdk
2. Domain d2ez9a3: 2ez9 A:366-593 [132629]
  Other proteins in same PDB: d2ez9a1, d2ez9b1
  automated match to d1powa3
  complexed with fad, mg, na, tdk
3. Domain d2ez9b2: 2ez9 B:9-182 [132631]
  Other proteins in same PDB: d2ez9a1, d2ez9b1
  automated match to d2ez9a2
  complexed with fad, mg, na, tdk
4. Domain d2ez9b3: 2ez9 B:366-593 [132632]
  Other proteins in same PDB: d2ez9a1, d2ez9b1
  automated match to d1powa3
  complexed with fad, mg, na, tdk
Domain(s) for 2ezt:
1. Domain d2ezta2: 2ezt A:9-182 [132634]
  Other proteins in same PDB: d2ezta1, d2eztb1
  automated match to d2ezua2
  complexed with fad, mg, na, po4, pyr, tdm
2. Domain d2ezta3: 2ezt A:366-593 [132635]
  Other proteins in same PDB: d2ezta1, d2eztb1
  automated match to d1powa3
  complexed with fad, mg, na, po4, pyr, tdm
3. Domain d2eztb2: 2ezt B:9-182 [132637]
  Other proteins in same PDB: d2ezta1, d2eztb1
  automated match to d2ezua2
  complexed with fad, mg, na, po4, pyr, tdm
4. Domain d2eztb3: 2ezt B:366-593 [132638]
  Other proteins in same PDB: d2ezta1, d2eztb1
  automated match to d1powa3
  complexed with fad, mg, na, po4, pyr, tdm
Domain(s) for 2ezu:
1. Domain d2ezua2: 2ezu A:9-182 [132640]
  Other proteins in same PDB: d2ezua1, d2ezub1
  automated match to d2ezua2
  complexed with fad, htl, mg, na, pyr
2. Domain d2ezua3: 2ezu A:366-593 [132641]
  Other proteins in same PDB: d2ezua1, d2ezub1
  automated match to d1powa3
  complexed with fad, htl, mg, na, pyr
3. Domain d2ezub2: 2ezu B:9-182 [132643]
  Other proteins in same PDB: d2ezua1, d2ezub1
  automated match to d2ezua2
  complexed with fad, htl, mg, na, pyr
4. Domain d2ezub3: 2ezu B:366-593 [132644]
  Other proteins in same PDB: d2ezua1, d2ezub1
  automated match to d1powa3
  complexed with fad, htl, mg, na, pyr

More info for Species Lactobacillus plantarum [TaxId:1590] from c.36.1.0 automated matches

Timeline for Species Lactobacillus plantarum [TaxId:1590] from c.36.1.0 automated matches:

Species Lactobacillus plantarum [TaxId:1590] from c.36.1.0 automated matches is new in SCOPe 2.04-stable
Species Lactobacillus plantarum [TaxId:1590] from c.36.1.0 automated matches appears in SCOPe 2.05
Species Lactobacillus plantarum [TaxId:1590] from c.36.1.0 automated matches appears in the current release, SCOPe 2.08